Query= MSMg01no060_f18.b1 MSMg01no060_f18.b1 CHROMAT_FILE:
MSMg01no060_f18.b1 PHD_FILE: MSMg01no060_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:04 2005
(580 letters)
>mm_chr2_77234875_77235854
Length = 980
Score = 1019 bits (527), Expect = 0.0
Identities = 563/575 (97%), Gaps = 2/575 (0%)
Strand = Plus / Plus
Query: 7 gaattcactctgtagcccaggctggcctcgaactcagaaattcacctgcctctgcctccc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactctgtagaccaggctggcctcgaactcagaaattcacctgcctctgcctccc 266
Query: 67 aagtgctgggattaagggcgtgcgccaccacgcctggctaggctttcttaacacagcaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 aagtgctgggattaagggcgtgcgccaccacgcctggctaggctttcttaacacagcgat 326
Query: 127 gggtaaggattacagcatgagcgctggtgactttcaagtagtcactccggaaggcatgtg 186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 gggtaaggattacagcatgagcgctggtgactttcaagtagtcactctggaaggcatgtg 386
Query: 187 ctcagtgtggatgacgcctaccccagggctgtgtagatggatctccttccttcatccttt 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcagtgtggatgacgcctaccccagggctgtgtagatggatctccttccttcatccttc 446
Query: 247 cctgaagatcaggcgcaattaaggcaggactgcatacaatgtgttcagaggggtgactgg 306
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cctgaagaccaggcgcaattaaggcaggactgcatacaatgtgttcagaggggtgactgg 506
Query: 307 atagtccagtgagggtcccagcaccccacaacccccatcttctataaaagagggaagtcc 366
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atactccagtgagggtcccagcaccccacaacccccatcttctataaaagagggaagtcc 566
Query: 367 aactcgc-acgatcttttgtgagcatgcccagaagaattcctgaagatgatggcaggcag 425
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aact-gtgatgatcttttgtgagcatgcccagaagaattcctgaagatgatggcaggcag 625
Query: 426 tttggttgggtctggatagtctttaattacaaacattaatctgatcagtgcccttctaat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttggttgggtctggatagtctttaattacaaacattaatctgatcagtgcccttctaat 685
Query: 486 atccctcccatttcatgacaagcatagaggctaattccaactcttgccaatatgttcata 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atccctcccatttcatgaaaagcatagaggctaattccaactcttgccaatatgttcata 745
Query: 546 aagaacatgctggtaacctggagtagaagctacaa 580
||||| |||||||||||||||||||||||||||||
Sbjct: 746 aagaaaatgctggtaacctggagtagaagctacaa 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f18.g1 MSMg01no060_f18.g1 CHROMAT_FILE:
MSMg01no060_f18.g1 PHD_FILE: MSMg01no060_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:04 2005
(443 letters)
>mm_chr2_77350632_77351474
Length = 843
Score = 789 bits (408), Expect = 0.0
Identities = 441/466 (94%), Gaps = 23/466 (4%)
Strand = Plus / Minus
Query: 1 gtacatgggccagagagtcagagagaaatcaatcgctacctggctgtgtgtacactgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtacatgggccagagagtcagagagaaatcaatcgctacctggctgtgtgtacactgctg 449
Query: 61 ccacagcgtgagaaacaccatcttcctgatgaattcatcattttgtataaaagctctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccacagcgtgagaaacaccatcttcctgatgaattcatcattttgtataaaagctctgca 389
Query: 121 ttactggtaaactgaaggacatcatgactcgccatccatcacggctccaccactgctttc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 388 ttactggtaaactgaaggacatcatgacttgccatccatcacggctccaccactgctttc 329
Query: 181 tcacgcagaacctcagtgcttgcacgccagacagagcggggagcttccgtggggtccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcacgcagaacctcagtgcttgcacgccagacagagcggggagcttccgtggggtccttt 269
Query: 241 gtgtacacagcattgccccaggcttcttcagtggcagatgctggggaagctctctgcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtgtacacagcattgccccaggcttcttcagtggcagatgctggggaagctctctgcagg 209
Query: 301 ctttggggcaca------------agtatctgtaactcctcttccaaggaatctaatgtc 348
||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 cttcggggcacagggaacctcacaagtatctgtaactcctcttccaaggaatctaatgtc 149
Query: 349 ttctgtcccacacccccatatatacaaggtacatata-----------tttacatacaca 397
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 148 ttctgtcccacacccccatatatacaaggtacatatagggtacatatatttacatacaca 89
Query: 398 caagcaaaacagttccacatagtaaatagaataatctttttaaaaa 443
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 caagcaaaacagttccacatagtaaatagaataatctttttaaaaa 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
