BAC Information

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BAC

Clone NameMSMg01-060F19
Chromosome2 (Build37)
Map Location 114,067,660 - 114,068,063
singlet/doubletsinglet
Overlap genenone
Upstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060F19.T7 (MSMg01no060_f19.b1)MSMg01-060F19.TJ (MSMg01no060_f19.g1)
ACCAG286823AG286824
length701739
length of high quality
(start - end)
414 (39 - 452)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no060_f19.b1 PHD_FILE: MSMg01no060_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:04 2005CHROMAT_FILE: MSMg01no060_f19.g1 PHD_FILE: MSMg01no060_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATT
CTCTCTTTACCCAAACATCTATGAAGAATAAAAGGAAAGGGGCGGGAAGA
AGAAAATGCAAAGGAGATATTAAAAAACAACAACAACAACAACAACAAAA
GAACATTGGCTCGCTAAGGCCTGGGTGAAGCTGTTTCTGCCCTTTTCTGA
AAGGTCCTCCTTAGAGTAACACCTTCTGGGCCTTACTATGAATTGCTAAC
TTCTTCTTAGAAGATGCCCTGAGACTTTTTAGCCGAAGGAAGAAATACTC
TGCTTTCAGACAGATGTGGGACCACATTCTTTTGCAATTATCCCCCTCCT
TCCAGTCCACAACCAATCAACACCACTGAAGTTTTATTTCCAAAGAAAAA
TAAATGTCACATTCCCCCCAGCAACACACTGGCCAGAGGCATGTCTTTGT
GGTTCACATAGATTGTTATCTTTCTTTATGCTGTGCTTGAAAGGGCAGGC
TTAGCTTTATAATACCTGCTAAGATGAAGCCTGCACAAATGTAATGCACT
GGGTGTTAACATGTGGCGCCTGCTCATTCTGTGACCAAGGCTCATCTGGT
TGCCAGATCTAAGACGAGGATTGGGAAGAACACCAGTGAGATTATCAACT
GCCCAAAGACATACTTCTGTTTATTCCATTCTGCACTCCCATTGAAAGTG
G
NAAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAACAGAGT
CAATTAGCCTGGACCCTTCGTGCTCTCAGAGACTGAACCACAAACAAAAG
AACACACACAAGCTGTACCTAGGCCTCCCTGCACATATATAGCAGATGTG
CAGCTTGGCCTTCATGTGATTCCAGAACTGGAGTGGAGCTATCCCAAAAG
CTGTTGCCTGTTCTTGGGATATGTTCTTCTAGCTAAGCTGCATTATCTGG
TGTCAGTGGGAGAGGATATGCCTAACCTCACAGAGACTTGATGTGCAGGG
AGTAGAGGGGGTGTATGCAGGGAGACCTCACCCACTCAGAGGATAAGGGG
ACGGGAGGTTGAGGAGAACCACCGTGGGAGGGGGTGACCGCAACGCCTCT
CCCCTATTACTTCATTCTACATTTACACTTTCCACCACCACTTCCTATAT
GTTTCACACTAACCTCTCTTTACTATTTTAAACAATCGCAGGAAAAAAAA
AATCAATCGAATCATTCCAGCACTTCATTATATCGCCGATCTAACCCTAC
TCCAAACAAAAAAACAAACCGTATTTTTCGTTGAATCCATCGACAAACAA
CACCATGGGTGATAAATACATTTATTATACATACCCATTACAAATCCCAG
CCTTTTTTCTTTTTTCTCCCCCATTTCTTTATACTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_f19.b1 MSMg01no060_f19.b1 CHROMAT_FILE:
MSMg01no060_f19.b1 PHD_FILE: MSMg01no060_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:04 2005
         (414 letters)



>mm_chr2_114067350_114068163
          Length = 814

 Score =  710 bits (367), Expect = 0.0
 Identities = 396/407 (97%), Gaps = 3/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctctctttacccaaacatctatgaagaataaaaggaaaggggcgggaagaagaaa 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaattctctctttatccaaacatctatgaagaataaaaggaaaggggcgggaagaagaaa 655

                                                                       
Query: 68  atgcaaaggagatattaaaaaacaacaacaacaacaacaacaaaagaacattggctcgct 127
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||
Sbjct: 654 atgcaaaggagatattaaaa---aacaacaacaacaacaacaaaagaacattggctctct 598

                                                                       
Query: 128 aaggcctgggtgaagctgtttctgcccttttctgaaaggtcctccttagagtaacacctt 187
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 597 aaggcctggatgaagctgtttctgcccttttctgaaaggtcctccttagagtaacatctt 538

                                                                       
Query: 188 ctgggccttactatgaattgctaacttcttcttagaagatgccctgagactttttagccg 247
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 537 ctgggccttactatgaattgctaacttcttcctagaagatgccctgagactttttagccg 478

                                                                       
Query: 248 aaggaagaaatactctgctttcagacagatgtgggaccacattcttttgcaattatcccc 307
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 477 aaggaagaaatactctgctttcagacagatgtgggaccatgttcttttgcaattatcccc 418

                                                                       
Query: 308 ctccttccagtccacaaccaatcaacaccactgaagttttatttccaaagaaaaataaat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctccttccagtccacaaccaatcaacaccactgaagttttatttccaaagaaaaataaat 358

                                                          
Query: 368 gtcacattccccccagcaacacactggccagaggcatgtctttgtgg 414
           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gacacattccccccagcaacacactggccagaggcatgtctttgtgg 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)