BAC Information

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BAC

Clone NameMSMg01-060I17
Chromosome2 (Build37)
Map Location 48,921,151 - 48,921,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I17.T7 (MSMg01no060_i17.b1)MSMg01-060I17.TJ (MSMg01no060_i17.g1)
ACCAG286963AG286964
length706704
length of high quality
(start - end)
663 (44 - 706)631 (74 - 704)
definitionCHROMAT_FILE: MSMg01no060_i17.b1 PHD_FILE: MSMg01no060_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:18 2005CHROMAT_FILE: MSMg01no060_i17.g1 PHD_FILE: MSMg01no060_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACATAGACTAGACCAGAAAAGAAATTCCTCCCATCACATAATAGTC
AAAACACCAAATGCACAAAACAAAGAAAGAATATTAAAAGCAATAAGGGA
AAAAGGTCAAGTAACATATAAAGGCAGACCTATCATAATTACACCAGACT
TCTCACCAGAGACTATGAAAGCTAGAAAATCCTGGGCAGATCTCATACAG
ACCCTAACAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACT
CTCAATTGCCATAGATGGAGAAACCCAGATATTCCATGACAAAACCAAAT
TCACACCATATCTTTCCACAAATCTAGCCCTACAAAAGAAGGATAATAGC
TGGGAAAAATCATCACAAGGAGGGAAACTTCACCCTGGAAAAAGCAAGAA
AGTAATCTTCTTTCAACAAACCCAAAAGAAGATAACCACACAAATATAAA
AATAACATAAAAAATAACAGGAAGCAACAATCATTATTCCTTAATATCTC
AATATCAATAGACTCAATTTCTCAATAAAAGGACAGAATAACAGACTGGA
TAGGTAAACAGGACCCAGCATTTTGCTGCATATAGGAAACACAACTCAGT
GTCAAATAAAGATGCCAACTCAGAGGAAAGGGCTGGAAAACAATTTTCCA
AGAAAN
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTTCAGTCATTAGGCTTATGTAATA
GTTTATATGTTTGACCACTCCGGTGAGTTTAGACTTTTTTAGTTCCACAT
TAGAGTAATTAATTGTTTACAACCTTTTTTTTTTTAATCTTCTGAAGGAA
ATACTCAAATGCTATTTTAAATTTTGCAAAATATAAAAGTTCATGTCATG
ATTTCTCATAATCTTTCCTTGTGCTATAGTTATCTGTATCGGTGCTATTT
AGAATTTGAATTTTAAAGTGTTTTCCTTTCCAAAGTACTTTAATCCTAAT
GCATTTTCATGTAAGTGGGATGTAAAAACATGTTTAACATATTGGGAAAA
CCCATGACAATGTCTCAAATAATTTGCACTTTATTAAAGATAATGCATTT
TAAAATAGACACATTTAAAAGTATAATTTAATTTAATTATAGAATAATTT
TGGGTTGTTCAGTTTTTAGTTGACAAATAATTATGTATACCATGTTTTGA
TTTGTGTATACATTGTAGAATGATTAAATCTAGACAATTAGCATATCTTC
AGCTCACTAATGTTTTTATAGTGAGGATATTTAAAATTGGTTAGCATTTT
AAATGCATATGAAAAACAGTGTTAATGAAGGTCACTATGCAGAGCACTGA
AATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i17.g1 MSMg01no060_i17.g1 CHROMAT_FILE:
MSMg01no060_i17.g1 PHD_FILE: MSMg01no060_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
         (631 letters)



>mm_chr2_48920951_48921977
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 625/631 (99%), Gaps = 4/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttcagtcattaggcttatgtaatagtttatatgtttgaccactccggtgagtttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttcagtcattaggcttatgtaatagtttatatgtttgaccactccggtgagtttaga 260

                                                                       
Query: 61  cttttttagttccacattagagtaattaattgtttacaacctttttttttttaatcttct 120
           |||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||
Sbjct: 261 cttttttagttccacattagagtaattaattgtttac---ctttttttttt-aatcttct 316

                                                                       
Query: 121 gaaggaaatactcaaatgctattttaaattttgcaaaatataaaagttcatgtcatgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaggaaatactcaaatgctattttaaattttgcaaaatataaaagttcatgtcatgatt 376

                                                                       
Query: 181 tctcataatctttccttgtgctatagttatctgtatcggtgctatttagaatttgaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctcataatctttccttgtgctatagttatctgtatcggtgctatttagaatttgaattt 436

                                                                       
Query: 241 taaagtgttttcctttccaaagtactttaatcctaatgcattttcatgtaagtgggatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taaagtgttttcctttccaaagtactttaatcctaatgcattttcatgtaagtgggatgt 496

                                                                       
Query: 301 aaaaacatgtttaacatattgggaaaacccatgacaatgtctcaaataatttgcacttta 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 aaaaacatgtttaacatattgggaaaacccatgaaaatgtctcaaataatttgcacttta 556

                                                                       
Query: 361 ttaaagataatgcattttaaaatagacacatttaaaagtataatttaatttaattataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaaagataatgcattttaaaatagacacatttaaaagtataatttaatttaattataga 616

                                                                       
Query: 421 ataattttgggttgttcagtttttagttgacaaataattatgtataccatgttttgattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataattttgggttgttcagtttttagttgacaaataattatgtataccatgttttgattt 676

                                                                       
Query: 481 gtgtatacattgtagaatgattaaatctagacaattagcatatcttcagctcactaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgtatacattgtagaatgattaaatctagacaattagcatatcttcagctcactaatgt 736

                                                                       
Query: 541 ttttatagtgaggatatttaaaattggttagcattttaaatgcatatgaaaaacagtgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttttatagtgaggatatttaaaattggttagcattttaaatgcatatgaaaaacagtgtt 796

                                          
Query: 601 aatgaaggtcactatgcagagcactgaaatg 631
           ||||| |||||||||||||||||||||||||
Sbjct: 797 aatgacggtcactatgcagagcactgaaatg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1027
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1017
Effective search space:   631557
Effective search space used:   631557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)