BAC Information

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BAC

Clone NameMSMg01-060L12
Chromosome2 (Build37)
Map Location 151,460,608 - 151,460,895
singlet/doubletsinglet
Overlap genenone
Upstream geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
Downstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L12.T7 (MSMg01no060_l12.b1)MSMg01-060L12.TJ (MSMg01no060_l12.g1)
ACCAG287097AG287098
length707702
length of high quality
(start - end)
95 (150 - 244)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no060_l12.b1 PHD_FILE: MSMg01no060_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:31 2005CHROMAT_FILE: MSMg01no060_l12.g1 PHD_FILE: MSMg01no060_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTCTCTCATAACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTCAGAGCATCCGCGGAATTCAATTATGTTCCCCATAAAATCCTTCA
ACCCTAAAGAATACCTCCTACTCTTACTTTTTCCTGTGAAGATAACATAG
ATTGACAAGAAATGACAATGGTCTGAAGCTCTGGAGCAAGACTCAAGTCC
TCTTTCTTTAGACAACAGCTCATGTGAAGTAGTGTAAAAGGATAAGGCAG
TCAGTCCTGTTTCCTGAGCTAGTAGAGCCACATGAGTTTACGATAAGGAA
GCCAGACGTCCCATACTGAAGAACTAACTGCACAAAGAAGTTTCCTCTGA
GCCTCCTGCCTGCTCTTAGCCAGCTGAGGCTACTCCGGTCCAGCACCACC
AGTGCATGTCAGATACCGGAGGCAGCTTTCCCCTGCCCCCCCCACTGAAG
ACCTACAGAGTATATTGTACATTTTCGTTGAATTTAAAATGTGGTCCTGC
TCAGGTCACGTCCTGTTCACATTTGACCCGACATACTATACTTCTTCCGC
AACAACCCATCAATGTATTGTGACCACTATCCTAGTGCCCTCCTTCCCTA
AGCCATTTCGCCCCCCGCATACCCCCCCACCCCCCGACTGTTCCCTATTA
CGTACTTCAACCGTTCTGTCGCTCCTCCCACCCCTACCTTCTTCCTTCTA
CCTTTTT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTACTGACTGACACCATTCCAGATGGG
AGTAGTGTGGGTGGAAGAGCTCTCTTGCTTTGGGGACATTGTTAGTGGAG
ACTTCTGGGAAATGTAGTCTTTTAAATAACCAGGGGGAAAAAAAACCAGG
AAGACGATATGGAGATAGATCACAGTCTTAGAAATTCTCTCCCCATAAAC
ATGCAATGATTACATGGTATTGTTTAAGTAAGAAGACGTTACTTGTTTAA
TTAAGGCAGATAAAGCATGCCATCACTAGTTCTCTGGTGTAGTATTAGGG
GGTTTTTGTTTGTCTCCCTCCCCCCCCCTCGTGGCCTCGTCCCCCCCCCC
TTCCTCTCTTTCTCCCCCCCCCACACTACAACACCCCCCTTATTTTCTTT
CCCCTCGCCCCCCTCCCCCTCCCCCCCCATCCTCCCCCCCATCCTCCCTT
ATACCCCTCCCTCCTCACCCCTCCCCCACTCCCCACATCCGTACTCTCCC
TTTCGCCCCCCCCCCCTCCCCGCCCTATTGCCCTCCCCATTCCCTACCTT
TTACGCCCTTCATTCCCGCTCCCTACACTTCCTTGTCTTTTCCTCCTTTT
CTCCCCCCTTCTTTCCTTTTTCTCGCCCTTCTCCCTCACATTTTTCTTCT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l12.g1 MSMg01no060_l12.g1 CHROMAT_FILE:
MSMg01no060_l12.g1 PHD_FILE: MSMg01no060_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:31 2005
         (287 letters)



>mm_chr2_151460408_151461095
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgactgacaccattccagatgggagtagtgtgggtggaagagctctcttgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttactgactgacaccattccagatgggagtagtgtgggtggaagagctctcttgctttg 429

                                                                       
Query: 61  gggacattgttagtggagacttctgggaaatgtagtcttttaaataaccagggg-gaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 428 gggacattgttagtggagacttctgggaaatgtagtcttttaaataaccaggggaaaaaa 369

                                                                       
Query: 120 aaaaccaggaagacgatatggagatagatcacagtcttagaaattctctccccataaaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaccaggaagacgatatggagatagatcacagtcttagaaattctctccccataaaca 309

                                                                       
Query: 180 tgcaatgattacatggtattgtttaagtaagaagacgttacttgtttaattaaggcagat 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgcagtgattacatggtattgtttaagtaagaagacgttacttgtttaattaaggcagat 249

                                                           
Query: 240 aaagcatgccatcactagttctctggtgtagtattagggggtttttgt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaagcatgccatcactagttctctggtgtagtattagggggtttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)