BAC Information

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BAC

Clone NameMSMg01-060P13
Chromosome2 (Build37)
Map Location 109,168,046 - 109,168,667
singlet/doubletsinglet
Overlap geneKif18a
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060P13.T7 (MSMg01no060_p13.b1)MSMg01-060P13.TJ (MSMg01no060_p13.g1)
ACCAG287291AG287292
length732700
length of high quality
(start - end)
626 (35 - 660)413 (91 - 503)
definitionCHROMAT_FILE: MSMg01no060_p13.b1 PHD_FILE: MSMg01no060_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:50 2005CHROMAT_FILE: MSMg01no060_p13.g1 PHD_FILE: MSMg01no060_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGTAT
ATACGTTTCTCCTAGCAAAATACCTGAAAGTCTCAAAGGTTAGAAGTTCA
AATTCATCTTGGTTATAAAGTGAGATCAGAGGCTAAATTCAGGTAGGTAC
TTGATACCTGTTCTCCAAGAAACAAAACTACCTTCCTTAGCCACTCCACC
AAAGGCTACCATAGATTTCAAACAAGAACAACTTTCTTGCCTGCCTTAGG
CCTCAAGCAAAATAAAAGTAACAGCAATAAAAACTAAAGTAATACAAACC
CTCACAAACACTGACATTTCTAGTCATGAGACTAATAGGGTTCAGCAATC
TCTATTTTTTACTGAACCTTGTAACTAAAGCGGTAGCATGATTACTTGCA
GACCACCACAAAAGTCACGTGGGCTACAATTTCAGCCTCAAACAAGAATT
TAGTATCTGACAATCCTAGTGTTCATTGAAGCTTTCTCATTTAATACTTT
GCTGTTCAACAGTAAGAAAATGGATACACTTCAACTCACAATGTCAATAA
TATGTGCTGTTGGCAAATATGCAGCCTCTTGTTTTCTAGCTTATTGTAGT
TACCAGGAGATACCCAGTAATATGAAATAATGGCAATCAGGATTAACATA
ATGACTTACACAAATCAGATTATTTCCACAGACCCAAAAACTATGAATAG
AAGATACCATCCTAGTTGCAAAGTACTATATG
NCCTCCTNNNNNACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTACTG
AGTGGGCTTTAAATCCCACTAGATTTTGGCTACCTCCAAGGTATAAGTGC
CACTAATACACCCTTGGAGATATCCTGCAATGCTGACAATTGTTGTGTTT
CATGAGCTTAACAGCTGGGGATACTGTTGCTTGCTTTTTCTCCTTTGACA
TCTTCAATAGCACTAATCAATACTAAAAGAGTCATTCTTCAGGGAGAAGC
CTTCCAAGACAATACACCTGGATTCCTCCTAGTCCTATGTCAAATGTCCC
TGGAGTCTTCAGCAATAGGGTCTTATCTTTGACTTCTAGAAGGCACAAAA
GGACAAAGGAAATAGATTATATTATTTGGGGATCATTTTGACTTCTTTAA
CAACTCAAGGGCTAATTCCCCATTCTGGCAGTGAATTGTTTCATTTTTGG
TTTTGCTTTTAAGATACTCTATAGCTCTTGTGCGCAGGACTATCCACTCC
AAGCGTTCCAAGTTAACTCCCTCCTTTCCTGTTTGCGTGTGCCTGTGCCC
CCAACCCCACTCCCAATTCCCCCTTCCTCCTCTCCTTCCCCCTTTTCCCA
CCTCCCTCCTACTACCCACCTCCTCTTCCTCCACTATATTCTTTCCTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_p13.b1 MSMg01no060_p13.b1 CHROMAT_FILE:
MSMg01no060_p13.b1 PHD_FILE: MSMg01no060_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:50 2005
         (626 letters)



>mm_chr2_109167842_109168867
          Length = 1026

 Score = 1164 bits (602), Expect = 0.0
 Identities = 617/622 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtatatacgtttctcctagcaaaatacctgaaagtctcaaaggttagaagtt 64
           ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 826 gaattcatgtatagatgtttctcctagtaaaatacctgaaagtctcaaaggttagaagtt 767

                                                                       
Query: 65  caaattcatcttggttataaagtgagatcagaggctaaattcaggtaggtacttgatacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 caaattcatcttggttataaagtgagatcagaggctaaattcaggtaggtacttgatacc 707

                                                                       
Query: 125 tgttctccaagaaacaaaactaccttccttagccactccaccaaaggctaccatagattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgttctccaagaaacaaaactaccttccttagccactccaccaaaggctaccatagattt 647

                                                                       
Query: 185 caaacaagaacaactttcttgcctgccttaggcctcaagcaaaataaaagtaacagcaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caaacaagaacaactttcttgcctgccttaggcctcaagcaaaataaaagtaacagcaat 587

                                                                       
Query: 245 aaaaactaaagtaatacaaaccctcacaaacactgacatttctagtcatgagactaatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aaaaactaaagtaatacaaaccctcacaaacactgacatttctagtcatgagactaatag 527

                                                                       
Query: 305 ggttcagcaatctctattttttactgaaccttgtaactaaagcggtagcatgattacttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggttcagcaatctctattttttactgaaccttgtaactaaagcggtagcatgattacttg 467

                                                                       
Query: 365 cagaccaccacaaaagtcacgtgggctacaatttcagcctcaaacaagaatttagtatct 424
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cagactaccagaaaagtcacgtgggctacaatttcagcctcaaacaagaatttagtatct 407

                                                                       
Query: 425 gacaatcctagtgttcattgaagctttctcatttaatactttgctgttcaacagtaagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gacaatcctagtgttcattgaagctttctcatttaatactttgctgttcaacagtaagaa 347

                                                                       
Query: 485 aatggatacacttcaactcacaatgtcaataatatgtgctgttggcaaatatgcagcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatggatacacttcaactcacaatgtcaataatatgtgctgttggcaaatatgcagcctc 287

                                                                       
Query: 545 ttgttttctagcttattgtagttaccaggagatacccagtaatatgaaataatggcaatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgttttctagcttattgtagttaccaggagatacccagtaatatgaaataatggcaatc 227

                                 
Query: 605 aggattaacataatgacttaca 626
           ||||||||||||||||||||||
Sbjct: 226 aggattaacataatgacttaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)