BAC Information

Click to search

BAC

Clone NameMSMg01-061F15
Chromosome2 (Build37)
Map Location 36,056,197 - 36,056,593
singlet/doubletsinglet
Overlap genenone
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F15.T7 (MSMg01no061_f15.b1)MSMg01-061F15.TJ (MSMg01no061_f15.g1)
ACCAG287581AG287582
length736730
length of high quality
(start - end)
402 (73 - 474)334 (73 - 406)
definitionCHROMAT_FILE: MSMg01no061_f15.b1 PHD_FILE: MSMg01no061_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:18 2005CHROMAT_FILE: MSMg01no061_f15.g1 PHD_FILE: MSMg01no061_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGACAGGATCCGCGG
AATTCCATCCTCAGCACATATATGGTAGAAGGGAAGAACTGACTCTTGAA
AGTTGTCCCCTGACCTCTACACATGTGCTATGGTGTGCATACACTCACAC
TTGTACACACATACGCTTAACATGTTTAAGACCTACAGCCTTGAACCCCA
AATTCTACCAGTCCCAGTGAAACTGAGTTTCTGATAAAATGGGGTAACTG
TGGAGGATGGAAAAGGAGAAACCAGCCCTACCTCTCCCTGGTTCCACTAT
TCCCCGGCATCCACTATTTACAGAGTGGGTGAGACAGAGAGGCGGCTGCC
TCATACAAAGTCATAGTTGGCAGCAAATCCTGGGATCTGGGACTGGAATG
TTGTGTGAGGGTGCCCCTAGGAACTGGCAAGTTGAGACTCTCACCATTTC
CAGGACACTCCACCTGGTGTACAGAAGGTGTTAGCGAGGTGAACGCGTGC
TCCCTTTCCCCCCTCTCCCCTTCTTTTCCCCCCCCTTTTTTTTTTCCCTC
CCCCCCCCCCTCCCCTCCTTTTTCCCCCTCTTTTCACCATTTCTCTCTCT
CCTCTTCATCTCCTCTTCTCCTCCTTCCCACCACCCCCCCCCCCCCCTTT
TCCCCCCCCCCCAATCTTCTCCCCTCTCCCCCTCCCTATTCCTTCCACCC
CATTCTTCTCCCCTCCCCCCTCTTTGCATCACTCCN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTTTGGCAGAGGAGATTTCAACACA
GTCTAAAATTGATGCTGCTGTGTATGTAGGAACTCACAATTACTCTTATG
CAGATTTAAAATGAAAGAGAATGAATGAGGCAGACAAACACAGAAAAGGT
ACAGTTGGAAAAGGAAATGACACTGGAAAGCATTATGTTACAGCTAAAGG
CTTGTGTTTGAAGAAATTCTGGAACTGTTAAGGGAATTGTTATGAAGGGG
AGGCCTGATTTGCACTGATATAAAGGGAGGTATACCCTTGGAATAAGACT
CTACCAAGAGATTCTTGCTACCTATGAGGTAGAGGACAGAAGGTCTTTCC
TGGTCAACAACAAATAGAAACCTCCTCAAACACGGCTTAAGGGGGACATA
TTCTGTAACAAACTGGCAAATAAACTTGGCAAAGTCATCTATGTGGCAAG
CATTTAGGAATGAAGAGAGCATGGAACACTTTTCTGCAGTTTTATTTAGA
CTTTGAGGCCATTCCTTGTAAACAGCCCCCGTAAAGTTACAGGTTAAAGC
TGTAAAATTGAAGCCTGGCCAGTGTTTGGAGCCCCCATGCTGTTTATAAT
CGTTACACCATATGATATCTGCCAATTGTACCTGACATCAAATAATATAC
TGCCAACTTATGAAGCCTGTATTGAAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f15.b1 MSMg01no061_f15.b1 CHROMAT_FILE:
MSMg01no061_f15.b1 PHD_FILE: MSMg01no061_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:18 2005
         (402 letters)



>mm_chr2_36055995_36056796
          Length = 802

 Score =  683 bits (353), Expect = 0.0
 Identities = 386/397 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtagaagggaagaactgactcttgaaagttgtcccctgacctctacacatgtgctatggt 62
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtagaaggaaagaactgactcttgaaagttgtcccctgacctctacacatgtgctatggt 262

                                                                       
Query: 63  gtgcatacactcacacttgtacacacatacgcttaacatgtttaagacctacagccttga 122
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 gtgcatacactcacacgtgtacacacatacgcttaacatgtttaagacctacagtcttga 322

                                                                       
Query: 123 accccaaattctaccagtcccagtgaaactgagtttctgataaaatggggtaactgtgga 182
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 accccaaattctaccagtcccagagaaactgagtttctgataaaatggggtaactgtgga 382

                                                                       
Query: 183 ggatggaaaaggagaaaccagccctacctctccctggttccactattccccggcatccac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggatggaaaaggagaaaccagccctacctctccctggttccactattccccggcatccac 442

                                                                       
Query: 243 tatttacagagtgggtgagacagagaggcggctgcctcatacaaagtcatagttggcagc 302
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 tatttacagagtgggtgaggcagagaggcggctgcctcatacaaagtcatagttggcagt 502

                                                                       
Query: 303 aaatcctgggatctgggactggaatgttgtgtgagggtgcccctaggaactggcaagttg 362
           || ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 503 aagtcctgggatctgggactggaatgttgtgtgagggtgggtctaggaactggcaagttg 562

                                                
Query: 363 agactctcaccatttccaggacactccacctggtgta 399
           |||||||||||| ||||||||||||||||||||||||
Sbjct: 563 agactctcaccacttccaggacactccacctggtgta 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)