BAC Information

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BAC

Clone NameMSMg01-061G16
Chromosome2 (Build37)
Map Location 33,021,853 - 33,196,796
singlet/doubletdoublet
Overlap geneRalgps1, Angptl2
Upstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneZbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061G16.T7 (MSMg01no061_g16.b1)MSMg01-061G16.TJ (MSMg01no061_g16.g1)
ACCAG287631AG287632
length717747
length of high quality
(start - end)
402 (39 - 440)195 (54 - 248)
definitionCHROMAT_FILE: MSMg01no061_g16.b1 PHD_FILE: MSMg01no061_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:23 2005CHROMAT_FILE: MSMg01no061_g16.g1 PHD_FILE: MSMg01no061_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,196,399 - 33,196,796)(33,021,853 - 33,022,042)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCGGAATTCAG
CACTTGCTCCTTCGTGAATACTTTGTGGGATCAGTTGTGATGGCACAGCG
TGGTGTCTGGTTTCTTCACCAACCTTCATCTCATTTGGATTTATAAATTC
TGGGGCTTGTGAGGGCCAGGCACATTCTGGGATGGATGCACAGGTGGGAC
CCAGTGATCTGCCAGGGGCAGGATGGTTGGGCATAGTTGTGAGTGAGTGC
TACCAGAAGGGCTATGGAAGCAGAATCCATACAGCTGTGGGACAGCAGTA
TTTGTCTACTAAGCTGCCTTCTGTATGAGCTCAGTAATGGCACAGGTACA
CCATTTTCCATGGAGGGAAACAGGCACCGACTCTAGGGCCTGAGCTTGAA
GGCTGCCACCCTACACCTTTCTGTTGGAAGATGGCGTGGTCCTGTGGGCT
CAGAGCAGGTTTTTATGAATACCTTTGCCTTACAGGACCTCTCAGACAGG
TTATGTCACCAGCAGAGGTGGCGTCGAAGTTCCCTGCGGCCTGGAGACTA
TGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACT
CCACAGGTATGAGGGCTATGGTAGGGTAGCCATGACTTGTTAACCTGTTC
ATGAATACTGGCCTTCTTATGGCGTCGTCACTCCATATGACAGGTCTCGG
ATTCAGTTATCCCTGTG
TTTXXXXXXXXXXXXXXXXXXXXXTTCAAAAAATTGAGGTGACCTATAGA
TTCCCCGCGGAATTCCACACCCAGACCTGTCTCTCAGGGGCTTTACTTTG
TTGGAGAAGACAGACATAGGGCAAGTGAGTATGCAGATGACTGCAGGTTA
GGCCATGCAGGCTACTGCCACACAAGGTCATTGTATGATGTAGGGCTACA
TCATGTAGTCCTGTGAGAGGCTGGGCAGGAAGTAAACCCAGCTTTGTAGG
CCATGGGGGCCACATCCCCCAAAAAATCAACTCCACAGCTGCTCACACAG
GCAAATATTAGGAACATGTGGCCAGATGTCATCCTATACAGAAACCAGGT
GAGTCTGTTTGGTGTTCAGAGCTTGCTGCCCCAGCGATACCATATCCAAC
TGAGGTCTTGGGCAGCGTCATTTAGCTAAAGTCTGTAGGCTAACTCAGTG
ACACAATTCCCCTTGGAAGCCACAACCTCATCACAGCTCACTAATGATAG
AGGTCTGGGCTAGATTCTTGCTAGGTGTCAGTAGCATCCCCTGTGCCTAT
AGTGTTGAGTGCTGATCATCCTGCAACAGCATTTTGTCTGACTTATAGTT
CTCAAACTACTGCCAGAATCATAATTTAAATAACCTGTCCCCAAACCTTC
AACTTCTTTAGATCCCCCTCTTACCTAAATGTCCCTTTCTGGAAAGGGCA
AAGAACATCTCGGGATTTTGTATTCACAACGTTCCTGCAGAACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_g16.b1 MSMg01no061_g16.b1 CHROMAT_FILE:
MSMg01no061_g16.b1 PHD_FILE: MSMg01no061_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:23 2005
         (402 letters)



>mm_chr2_33196195_33196996
          Length = 802

 Score =  716 bits (370), Expect = 0.0
 Identities = 391/398 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcacttgctccttcgtgaatactttgtgggatcagttgtgatggcacagcgtg 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattcagcacaaggtccttcgtgaatactttgtgggatcagttgtgatggcacagcgtg 543

                                                                       
Query: 65  gtgtctggtttcttcaccaaccttcatctcatttggatttataaattctggggcttgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtgtctggtttcttcaccaaccttcatctcatttggatttataaattctggggcttgtga 483

                                                                       
Query: 125 gggccaggcacattctgggatggatgcacaggtgggacccagtgatctgccaggggcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gggccaggcacattctgggatggatgcacaggtgggacccagtgatctgccaggggcagg 423

                                                                       
Query: 185 atggttgggcatagttgtgagtgagtgctaccagaagggctatggaagcagaatccatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atggttgggcatagttgtgagtgagtgctaccagaagggctatggaagcagaatccatac 363

                                                                       
Query: 245 agctgtgggacagcagtatttgtctactaagctgccttctgtatgagctcagtaatggca 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 362 agctgtgggacagcagtatttgtctacaaagctgccttctgtatgagctcagtaatggca 303

                                                                       
Query: 305 caggtacaccattttccatggagggaaacaggcaccgactctagggcctgagcttgaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caggtacaccattttccatggagggaaacaggcaccgactctagggcctgagcttgaagg 243

                                                 
Query: 365 ctgccaccctacacctttctgttggaagatggcgtggt 402
           ||||||   |||||||||||||||||||||||||||||
Sbjct: 242 ctgccagtttacacctttctgttggaagatggcgtggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no061_g16.g1 MSMg01no061_g16.g1 CHROMAT_FILE:
MSMg01no061_g16.g1 PHD_FILE: MSMg01no061_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:23 2005
         (195 letters)



>mm_chr2_33021648_33022242
          Length = 595

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccacacccagacctgtctctcaggggctttactttgttggagaagacagacata 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccacacccagacctgtctctcaggggctttactttgttggagaagacagacata 265

                                                                       
Query: 66  gggcaagtgagtatgcagatgactgcaggttaggccatgcaggctactgccacacaaggt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggcaagtgagtatgcagatgactgcaggttaggccatgcaggctactgccacacaaggt 325

                                                                       
Query: 126 cattgtatgatgtagggctacatcatgtagtcctgtgagaggctgggcaggaagtaaacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattgtatgatgtagggctacatcatgtagtcctgtgagaggctgggcaggaagtaaacc 385

                     
Query: 186 cagctttgta 195
           ||||||||||
Sbjct: 386 cagctttgta 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)