BAC Information

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BAC

Clone NameMSMg01-061I23
Chromosome2 (Build37)
Map Location 8,393,102 - 8,393,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream geneLOC100040710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061I23.T7 (MSMg01no061_i23.b1)MSMg01-061I23.TJ (MSMg01no061_i23.g1)
ACCAG287741AG287742
length724716
length of high quality
(start - end)
305 (68 - 372)90 (177 - 266)
definitionCHROMAT_FILE: MSMg01no061_i23.b1 PHD_FILE: MSMg01no061_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:34 2005CHROMAT_FILE: MSMg01no061_i23.g1 PHD_FILE: MSMg01no061_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATT
CTACAGCTCTAACCGAGCTGACTTCTTGCAAGCAGGGGGAGTACTAAAGG
GGACCTCATCTTTGCGGTTAGAAAGCATAAACAATATTTATCCAAAACTA
ATAGAGAAATTCTTGTGGTATATAAGAATTCATGAAAACTTAGTGTACTC
TGAAACACAAAGTGATGGCATAACAATGTGGTGTTAGTAGTGAATGTTTT
TAGAGATAGAAACAATAATAAATAATCAACAGCAACTACCTCTCTGTTTT
GTACACTAGGAAAGGGCTGATGCATACTAAGATTCACAAAATCATGAAAT
TATCTGTAGCTAACTAAGAATGCCAAGAGAGGACAAAGTTGATATTTAAA
GGGACATAAAAAATACTCATTAACCTTGTGCTTATTACATTAACTTAAAC
TCCATGAGAATGGTTACTTTATTAACCCTGGTTTACTTTCATATTTATGC
CAATTATGTCTCAGAGCCTCCAAAAGACTGTTAAATGTCTTCAATAGCAT
ATCTTTGAGACGATTACTTGATGGCATAGTCCACACAATTCAACATGAAC
TTCGCAACCACAAAAATAGCCTTAGAAGGAAACAACAAAGCCGTGTATGA
CACTTGCAAAAATTTGAAAATCAATTCTATATTCATCGAGGGCAAAAAAT
TGTTGAAAACAAATTGAGAACAAA
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCACGAAACAAAGGGAAAATAACTCACA
CGGACTCAATCTTTTAAAATCCTCTGAAAGTAAAGGAAGTATCGTTTTAT
TTTCTCTGATTGGTTTATACTGGAGAAATCTAGATATTCTCATATTTATG
CATGAGTTTTAATTCCCATTTCTTATATTTGAATTAAAATAATACCATAG
ATTTGGCTGCAAATAATTGCCTGATGAGTGTTCTCTTGAATAAATAATTG
AATTACATAAATTTCCTTTATACTAAACACAAATAAGAACTCCAGTGATA
ATAAAACTATAATGCCATGAAGTGAGACATTGACATTAAAGATGAACATA
TTGGAGACAGTGTGTCACCCCATGTATGATTATAGACATTAACAATGTTG
GTTATAATTCATGTTGTTTCATTTAGTACCCTTGGTATGGTTGACGTGAA
AAGTATGGGACATCTTCACTGTGTTTATTTAATATAATGAGCACTTTTCA
ACGTCGTTCTTGTCGCTGGCAAATGGAGAGAAAGTAAAGACCGCACAAAG
AGTGATATCATAGAATCTCACGTACATTGTAAACAGTGAACCCCAATAAA
ATGATCTGAAGGGACCTGAAACAAAAACAAAATGAGCCAACTGGTCCCAA
TGTGGAAACAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_i23.b1 MSMg01no061_i23.b1 CHROMAT_FILE:
MSMg01no061_i23.b1 PHD_FILE: MSMg01no061_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:34 2005
         (305 letters)



>mm_chr2_8392902_8393607
          Length = 706

 Score =  536 bits (277), Expect = e-157
 Identities = 298/305 (97%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacttcttgcaagcagggggagtactaaaggggacctcatctttgc-ggttagaaagc 59
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ctgatttcttgcaagcagggggagtactaaaggggacctcatctttgctggttagaaagc 446

                                                                       
Query: 60  ataaacaatatttatccaaaactaatagagaaattcttgtggtatataagaattcatgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaacaatatttatccaaaactaatagagaaattcttgtggtatataagaattcatgaa 386

                                                                       
Query: 120 aacttagtgtactctgaaacacaaagtgatggcataacaatgtggtgttagtagtgaatg 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 aacttagtgtactctgaaacacaaagtgatggcataacaacgtggtgttagtagtgaatg 326

                                                                       
Query: 180 tttttagagatagaaacaataataaataatcaacagcaactacctctctgttttgtacac 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 325 tttttagagataaaaacaataataaataatcaacagcaactacctctctgtcttgtagac 266

                                                                       
Query: 240 taggaaagggctgatgcatactaagattcacaaaatcatgaaattatctgtagctaacta 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggaaagggctgaagcatactaagattcacaaaatcatgaaattatctgtagctaacta 206

                
Query: 300 agaat 304
           |||||
Sbjct: 205 agaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space:   206312
Effective search space used:   206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)