BAC Information

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BAC

Clone NameMSMg01-061P09
Chromosome2 (Build37)
Map Location 57,635,197 - 57,751,870
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P09.T7 (MSMg01no061_p09.b1)MSMg01-061P09.TJ (MSMg01no061_p09.g1)
ACCAG288048AG288049
length720742
length of high quality
(start - end)
242 (132 - 373)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no061_p09.b1 PHD_FILE: MSMg01no061_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:05 2005CHROMAT_FILE: MSMg01no061_p09.g1 PHD_FILE: MSMg01no061_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,635,197 - 57,635,438)(57,751,628 - 57,751,870)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAATTCAATC
CTTGTTGTCACAATTGGGAGGAAGCAATCTCACCATTTGCAAACAAATAC
ACTACTCATAACAAAAAAATCAGCATCTCAGTTGATTTATTTCTTTGTAT
GTTGAATACTGACATGTTAAGTAACAATGTATTGCTGAAAATTAGTTTTT
CAAAACAAATTTAAATTAATGTTTTTAAATTGCAAATGATTAAAGAAAAA
ATGAATAGGATTTACCTTCCAAAAGAAAAGTAGAAAAGATGTGTGATAAT
TGCATATACCACACAGATGTCTAGAATTTTTACTTCATATATACATGAAA
ATACTAAAATGGACATGCATGGGTGAGGAAATGTCAGAAACTTTAAATTA
TTGAACACCCCAAAAAGAAAACTTATAGTTAACAAATAAAGCAATTGTGA
AATATGTATGTTATGAAATAATACTATACATGATCTATTATTTATGTAAA
AATATTTTCCTCCCCTGTGCCTATGTATGAGAACTGCCGACATGATAAAG
ACAACACACGACACCTGTATGCACCATTCCATTAAATACTTTCCTGCCGA
CTTTTTCTCACTTTCATGTATTGCTCCAAAAACCTGAAACCGCAATTAAC
ACTACATACAAGTTGCCACATCACGACCCCCAAATTGCATACTTTAGAAT
ATCTCCTATACTCATTACAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAACATCAAGAATTTGGCACCTCTGT
TCCTGCGTTTTGGGGAAGAACCTCAAATGAAGAGCAGATGTGGAATGGGA
AATCACAGCAAAGCTTCTGTGAGTGGAAAAATCCACAATACTGGAGAGCA
TTTTCCAGAAGACTGAACTTGTGTGCAATCTTTGTTGCTTAAAGTGTACT
CCTTTTGTTTGGATGTTTGTTTTTAATGAGACAAGTGATTGCTCATACCA
GCGTTTGTGTATCTCATTTTCTAGAAATAAAAGCAAATTGGAAATTTCAG
ATGAAATAATCTTTTGATTAATGGCTGCTATTGTAGCATCTTCTGGAAAG
AGCTCCTTATGTGAACGAGCTCTAACAGTATTTACTTACTTTCAGTAAAC
CTCCCTATAAACTCTCCTAGGAAAACATTTGTAGCTGTTTTCTGTATAAT
CTAAACAAATTCTAAAAGCTTATAATTTGTGTGTGCGTGTGTGTGTGTTT
GAGCGTGTGTAGAGATGTTTGCATAATATCTCTCTTTTTATTTTTTTTTT
TTTTTTTACTTTCTCACCCTTTTTAATTTTTTATATATTACTACTCATTC
CCTTCATATTTTAATATATTTTATTAACCTATTTTATCTCTTTATATTTC
TACTTTTATTATCTCCATCTACTTTTACTCAATCCTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p09.b1 MSMg01no061_p09.b1 CHROMAT_FILE:
MSMg01no061_p09.b1 PHD_FILE: MSMg01no061_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:05 2005
         (242 letters)



>mm_chr2_57634997_57635638
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatttatttctttgtatgttgaatactgacatgttaagtaacaatgtattgctgaaaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttgatttatttctttgtatgttgaatactgacacgttaagtaacaatgtattgctgaaaa 260

                                                                       
Query: 61  ttagtttttcaaaacaaatttaaattaatgtttttaaattgcaaatgattaaagaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtttttcaaaacaaatttaaattaatgtttttaaattgcaaatgattaaagaaaaaa 320

                                                                       
Query: 121 tgaataggatttaccttccaaaagaaaagtagaaaagatgtgtgataattgcatatacca 180
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tgaataggatttaccttcaaaaagaaaagtagaaaagatgtatgataattgcatatacca 380

                                                                       
Query: 181 cacagatgtctagaatttttacttcatatatacatgaaaatactaaaatggacatgcatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cacagatgtctagaatttttacttcatatatacatgaaaatactaaaatggagatgcatg 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no061_p09.g1 MSMg01no061_p09.g1 CHROMAT_FILE:
MSMg01no061_p09.g1 PHD_FILE: MSMg01no061_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:05 2005
         (243 letters)



>mm_chr2_57751428_57752070
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaacatcaagaatttggcacctctgttcctgcgttttggggaagaacctcaaatgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaacatcaagaatttggcacctctgttcctgcgttttggggaagaacctcaaatgaaga 384

                                                                       
Query: 61  gcagatgtggaatgggaaatcacagcaaagcttctgtgagtggaaaaatccacaatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcagatgtggaatgggaaatcacagcaaagcttctgtgagtggaaaaatccacaatactg 324

                                                                       
Query: 121 gagagcattttccagaagactgaacttgtgtgcaatctttgttgcttaaagtgtactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagagcattttccagaagactgaacttgtgtgcaatctttgttgcttaaagtgtactcct 264

                                                                       
Query: 181 tttgtttggatgtttgtttttaatgagacaagtgattgctcataccagcgtttgtgtatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 tttgtttggatgtttgtttttaatgagacaagtgattgctcataccagtgtttgtgtatc 204

              
Query: 241 tca 243
           |||
Sbjct: 203 tca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)