BAC Information

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BAC

Clone NameMSMg01-062A11
Chromosome2 (Build37)
Map Location 53,218,762 - 53,219,322
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
Downstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A11.T7 (MSMg01no062_a11.b1)MSMg01-062A11.TJ (MSMg01no062_a11.g1)
ACCAG288099AG288100
length1,1481,217
length of high quality
(start - end)
556 (88 - 643)755 (86 - 840)
definitionCHROMAT_FILE: MSMg01no062_a11.b1 PHD_FILE: MSMg01no062_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:11 2005CHROMAT_FILE: MSMg01no062_a11.g1 PHD_FILE: MSMg01no062_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTTTTNTNTNCCAATGCGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTCCTCTTCTATCTCCTCCTCCTGCTCCTCCTCCT
CTTTCTATTTTTGAGACAGCGTCTTACTCTGTAGCTTCGGCTGTCCTTGG
ACTTACTATATAGACAAGACTGACCTTGAACTCACAGAGATCTGTCTGCA
TTTGTCTCTGTGGTGAAGGCACTTTAATGCCTCTATGCTCAACTGATTCT
TCTTACAGAAAAGTCTTTCAAATGAGTTTGATGAAATGGGTAGGCTACTT
CCTGTGATGTTTATGCCAATCATTCTTTTGTCCCAGTGAAAAGTTCTTCA
CTTCCCTAACTCCTTGTAGTCAGGATGGCCTTAAACTTTTGATGTAGCTA
AAACGATCTTGAACTATTCATGCTTTTCACATTTTGGAAGGCTGGAAAGT
CTAAAATTAAGGCAAATTTGGTGTTGAGGGCCTATGGTCTTGTTGAATCT
TCATATGGGATGGGCTAAGCCTAGTCTGTCATCAGTGGGAGGAGAGGCCC
TTGGTCTTGTGAAGGCTTTATGCCCCAGTGTAGGGGAATGACGGGGCCAG
GAAGCAGGAGTGGGTGGGTTGGTAAGTAGGTGGAGGAGGAAGAGAATACN
TCNTCTACTATTATCAGCTCTCTGGGTTTTTAGTCCATTTTCTAAAACTA
TAAAGGAAAGCTGAATACTCAGTATAAGAAATGTGTCCAGAGAATAAAGG
AAAACATGTAGATTTGAACAGAAATGATAAAGATCACTCATACTGTTTTA
TTGAAATAATTAAATATGAAGTACATTGCAGACTGGTAAATAGTAATTGA
ATTATCCCATACGTGCATTAATTCACCTTATCTGCCTCCCTATTATTTCA
AACTCCCAAAGGGTTTTCTCTCCATCCCCATTATATTAATTGTNCCCTGC
CCCCCCCACCTTGTTTAATACCACCTCATTTTTTATTTCGGGAAACCCTG
ATTTTTCTTAAATTTTTTAATAGTCCCTTTCATTTTTTGTGTTATAAAAC
CTTTCTGTTCTTTTTCCCTTATTAATTGTATTATATTATTGTGTTGTCCC
CCGAATTTCTCTTCCCTCTTTTTTTTAACAACAAAAGCCTCTTTTTTT
NCCCATCAATTTTNNNTAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTCACCTGAGGAATACCAA
ATGGCGGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGAATTGCAGGTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATATTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGCGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACA
ATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACA
AAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAAATTGCC
ATATCCAGGGATCCACCCCATAATCAGCATCCAAACACTGACACCATTGC
ATATACTAGCAAGATTTTATCGAAAGGATCCAGATGTAGCTGTCTCTTGT
GAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCCCAGCTCGC
TTAATGGAGGGATTCCCGGGGCTCCCAATGGGAGGAACTTGTGGAAGTAA
CCCAAGGGACTTAAAGGATCCTGTAACCCTTTTAGGGGGAAAAACTTTTT
GGAACTAACCATTACCCCCGGAGTCTTGAAATTTAGCGGCGGATGATAAC
AAAAAAAGGCCTAATCCGCCCCCTTCTCGGAAAGAAAAGACCCCTGTGAA
TGGGAAATTTTTTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a11.b1 MSMg01no062_a11.b1 CHROMAT_FILE:
MSMg01no062_a11.b1 PHD_FILE: MSMg01no062_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:11 2005
         (556 letters)



>mm_chr2_53218562_53219523
          Length = 962

 Score =  988 bits (511), Expect = 0.0
 Identities = 546/561 (97%), Gaps = 6/561 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcctcctcctctttctatttttgagacagcgtcttactctgtagcttcggctgtcct 60
           ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 201 tgctccttctcctctttctatttttgagacagggtcttactctgtagctttggctgtcct 260

                                                                       
Query: 61  tggacttactatatagacaagactgaccttgaactcacagagatctgtctgcatttgtct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 261 tggacttactatatagacaagactgaccttgaactcacagagatctgtctgcctttgttt 320

                                                                       
Query: 121 ctgtggtgaaggcactttaatgcctctatgctcaactgattcttcttacagaaaagtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggtgaaggcactttaatgcctctatgctcaactgattcttcttacagaaaagtctt 380

                                                                       
Query: 181 tcaaatgagtttgatgaaatgggtagg------ctacttcctgtgatgtttatgccaatc 234
           |||||||||||||||||||||||||||      |||||||||||||||||||||||||||
Sbjct: 381 tcaaatgagtttgatgaaatgggtagggtctggctacttcctgtgatgtttatgccaatc 440

                                                                       
Query: 235 attcttttgtcccagtgaaaagttcttcacttccctaactccttgtagtcaggatggcct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcttttgtcccagtgaaaagttcttcacttccctaactccttgtagtcaggatggcct 500

                                                                       
Query: 295 taaacttttgatgtagctaaaacgatcttgaactattcatgcttttcacattttggaagg 354
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 taaactttcgatgtagctaaaacgatcttgaacttttcatgcttttcacattttggaagg 560

                                                                       
Query: 355 ctggaaagtctaaaattaaggcaaatttggtgttgagggcctatggtcttgttgaatctt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggaaagtctaaaattaaggcaaatttggtgttgagggcctatggtcttgttgaatctt 620

                                                                       
Query: 415 catatgggatgggctaagcctagtctgtcatcagtgggaggagaggcccttggtcttgtg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatgggatgggctaagcctagtctgtcatcagtgggaggagaggcccttggtcttgtg 680

                                                                       
Query: 475 aaggctttatgccccagtgtaggggaatgacggggccaggaagcaggagtgggtgggttg 534
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 681 aaggctttatgccccagtgtaggggaatgccagggccaggaagcaggagtgggtgggttg 740

                                
Query: 535 gtaagtaggtggaggaggaag 555
           |||||||||||||||||||||
Sbjct: 741 gtaagtaggtggaggaggaag 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 962
Length adjustment: 10
Effective length of query: 546
Effective length of database: 952
Effective search space:   519792
Effective search space used:   519792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)