Query= MSMg01no062_a24.b1 MSMg01no062_a24.b1 CHROMAT_FILE:
MSMg01no062_a24.b1 PHD_FILE: MSMg01no062_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:15 2005
(633 letters)
>mm_chr2_40719218_40720250
Length = 1033
Score = 812 bits (420), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 1 tatattcagtgaatttaatttagactttttctagtttttagtatccactgaataattaat 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 448 tatattcagtgaatttaatttagactttttctagtttttagtatctactgaataattaat 389
Query: 61 gttagttaccaattttcatttttgtaattattcataattagcattgtcaatagaatggac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attagttaccaattttcatttttgtaattattcataattagcattgtcaatagaatggac 329
Query: 121 ttactgtcattcctttgagcatagtgaagtctttgaatggaatcatttattatcacttca 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 328 ttactgtcattcctttgagcatagtgaagtttttgaatggaatcatttattatcacttca 269
Query: 181 tattgcttagttatgacatgtgatttttgtggggataggccatctattggaatagttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tattgcttagttatgacatgtgatttttgtggggataggccatctattggaatagttcat 209
Query: 241 ctaattagttgctatgaagcaatatgaccacagcatctcttataaaggaaaacatttaac 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 208 ctaattagttgctatgaagcagtatgaccacagcatctcttataaaggaaaacagttaac 149
Query: 301 ttagactgacttacaattgcagaggtttagtccattatcatcatggaaagaaacatgcag 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148 ttagactgacttacaattgcagaggtttagtccattatcatcatggcaagaaacatgcag 89
Query: 361 gcaaagatgcttctggagaaggagctgagaattctacatcttgatccataggcaggtacc 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 88 gcaaagatgcttctggagaaggagctgagaattctacatcctgatccataggcaggtacc 29
Query: 421 tcactagacatagcatgagcatatgtgt 448
||||||||||||||||||||||||||||
Sbjct: 28 tcactagacatagcatgagcatatgtgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_a24.g1 MSMg01no062_a24.g1 CHROMAT_FILE:
MSMg01no062_a24.g1 PHD_FILE: MSMg01no062_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:16 2005
(646 letters)
>mm_chr2_40546365_40547410
Length = 1046
Score = 1091 bits (564), Expect = 0.0
Identities = 617/644 (95%), Gaps = 18/644 (2%)
Strand = Plus / Plus
Query: 1 attcatccaaaccatcaaagtcaaacaattaacgattaacaccctaaccagaagcctagt 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 201 attcatccaaaccatcaaagtcaaacaattaaagattaacaccctaattagaagcctagc 260
Query: 61 tcatatggattcacaaaaaaattttagaagaccttcaaagcaaaaatgctttttaaattg 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatatggattcacagaaaaattttagaagaccttcaaagcaaaaatgctttttaaattg 320
Query: 121 aaattataaaagaccttcagaaaaacatactttaaaattttttctattaata-ataaaag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 321 aaattataaaagaccttcagaaaaacatactttaaaattttttctattaataga-aaaag 379
Query: 180 aagaaacacaccgagattcctatgaagtcaataatactctaataccaaaaaccagattaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaaacacaccgagattcctatgaagtcaataatactctaataccaaaaaccagattaa 439
Query: 240 gaaatacaccacacacacagggagagaaaaagagagagagaaagagagagagagagagag 299
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 440 gaaatacaccacacacacagggagagaaaaagagagagagaaagagacagacaga----- 494
Query: 300 agacagacagacagacagacagacagatagacacagacatagtcgtagagagacacagag 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ---cagacagacagacagacagacagatagacacagacatagtcgtagagagacacagag 551
Query: 360 agacagacagaactatagcacaatagcacaattttcctgatgagcattatcttagttggg 419
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 552 agacagacagaactatagcacaat--------tttcctgatgagcattatcttagctggg 603
Query: 420 atttcctttgctgtgcagagacatcatgactaagccaactcttataaaggagaattttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atttcctttgctgtgcagagacatcatgactaagccaactcttataaaggagaattttaa 663
Query: 480 attggggctggcttacagattcaaaagttctgtccacaatcatcaaagtgggaattatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 attggggctggcttacagattcaaaagttctgtccacaatcatcaaagtgggaattatgg 723
Query: 540 ccgcatccaggcatgctagccttggaggagctgagagttatccatcttgatcagaaggca 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cagcatccaggcatgctagccttggaggagctgagagttatccatcttgatcagaaggca 783
Query: 600 gccaggagaagactttttcacatatggctaggaggagggactta 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gccaggagaagactttttcacatatggctaggaggagggactta 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
