Query= MSMg01no062_i01.b1 MSMg01no062_i01.b1 CHROMAT_FILE:
MSMg01no062_i01.b1 PHD_FILE: MSMg01no062_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:10 2005
(828 letters)
>mm_chr2_20862507_20863734
Length = 1228
Score = 1497 bits (774), Expect = 0.0
Identities = 804/814 (98%), Gaps = 2/814 (0%)
Strand = Plus / Plus
Query: 10 cattctgctctgcggtggcattccctgattcccagcatatcattcctttgtctcca-ttt 68
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 210 cattctgctctgcggtggcatttcctgattcccagcatatcattcctttgtctccagttt 269
Query: 69 gtttccctctcttctcttcaagcatttcattcactccatttcttccccatcctccacact 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtttccctctcttctcttcaagcatttcattcactccatttcttccccatcctccacact 329
Query: 129 tatcaataccacatgcttttatcctacaacgttcttgggagcaggttaattttaatggtg 188
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 330 tatcaataccacatgcttttatcctacaatgttcttgggagcaggttagttttaatggtg 389
Query: 189 aagtcaagggaaccaagagctatcctaagtctactataaatcacaagttgtacacagaaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagtcaagggaaccaagagctatcctaagtctactataaatcacaagttgtacacagaaa 449
Query: 249 gcctagagccacatctgcccaccagatgtgtttgcttcagatcctactgttttggtattc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcctagagccacatctgcccaccagatgtgtttgcttcagatcctactgttttggtattc 509
Query: 309 tttaataagtcatcaatgtttaaaatataagacaagttcacatgcaaatctaaaaattta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttaataagtcatcaatgtttaaaatataagacaagttcacatgcaaatctaaaaattta 569
Query: 369 gattttttaaaaataaagtatcttgaggggctacagatagggctcagaaattaagaacac 428
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 570 gtttttttaaaaataaagtatcttgaggggctacagagagggctcagaaattaagaacac 629
Query: 429 tcattgctgggttcagttcccagcacccacacacagtggctcacaaccattgatgactcc 488
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 tcattgctgggttcagttcccagcacccacacacagtggctcacaaccatcaatgactcc 689
Query: 489 agttccaggagacccaaccccctcttctgatctgggccagcaccagctctgcatattaca 548
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 690 agttccaggagacccaaccccc-cttctgatctgggccagcaccagctctgcatattaca 748
Query: 549 tacataaacacacacaagcagtatctgtcaacaccagatccagcccaggagctgtttcct 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tacataaacacacacaagcagtatctgtcaacaccagatccagcccaggagctgtttcct 808
Query: 609 agagcttgctctcctgtctgaagacagtctctagtccctgcctctgtgcatgtctcttaa 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 809 agagcttgctctcctgtctgaagacagtctctagtccctgcctctgtgcatgtcccttaa 868
Query: 669 ctttttcatctcaggcctctgcatccaagtgctggattacaaatgtgtgccatcacaacc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ctttttcatctcaggcctctgcatccaagtgctggattacaaatgtgtgccatcacaacc 928
Query: 729 aaccagtctcctttcatacttccattacctggcctcagaggtactacatctgtgacttcc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aaccagtctcctttcatacttccattacctggcctcagaggtactacatctgtgacttcc 988
Query: 789 attaaatatatttaagtagtggcatcaatatcac 822
||||||||||||||||||||||||||||||||||
Sbjct: 989 attaaatatatttaagtagtggcatcaatatcac 1022
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 828
Length of database: 1228
Length adjustment: 10
Effective length of query: 818
Effective length of database: 1218
Effective search space: 996324
Effective search space used: 996324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_i01.g1 MSMg01no062_i01.g1 CHROMAT_FILE:
MSMg01no062_i01.g1 PHD_FILE: MSMg01no062_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:10 2005
(753 letters)
>mm_chr2_20957596_20958748
Length = 1153
Score = 1402 bits (725), Expect = 0.0
Identities = 746/753 (99%)
Strand = Plus / Minus
Query: 1 ataaaattcttgtgtcttacatgtcagtggccaatgcagtgtcctttttgccggctttgg 60
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 1114 ataaaattcttgtgtcttacatgtcagtggggaatgcagtgtcctttttgttggctttgg 1055
Query: 61 ttgggttgtgttattgggacagaatctcacagtgtagctcaggctggcttcagatttata 120
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1054 ttgggttgtgttcttgggacagaatctcacactgtagctcaggctggcttcagatttata 995
Query: 121 accatacttctgcctcagtctcctaggagctgggattacagtttatatacctgatttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 accatacttctgcctcagtctcctaggagctgggattacagtttatatacctgatttaga 935
Query: 181 atcctatttcttatagagaaatttctattaagagatctttgtggtctctgataactacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 atcctatttcttatagagaaatttctattaagagatctttgtggtctctgataactacta 875
Query: 241 taaaaagataagatttatgttttccaaaatgcatctctaggtaaactgctctgcctacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 taaaaagataagatttatgttttccaaaatgcatctctaggtaaactgctctgcctacat 815
Query: 301 gtgtttctcaccctttctgtctcacagttctgcagacaggaataaaatatgcataatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gtgtttctcaccctttctgtctcacagttctgcagacaggaataaaatatgcataatatt 755
Query: 361 catgctgatggagggtcctaataaccttctgggttgtcttacattcgtggtttagtctcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 catgctgatggagggtcctaataaccttctgggttgtcttacattcgtggtttagtctcg 695
Query: 421 gctctctttattctttgcaatagcaacagggagagcaagcttgctgctgggaaggaatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gctctctttattctttgcaatagcaacagggagagcaagcttgctgctgggaaggaatac 635
Query: 481 atttgtaaatgtaaacctttctaccattattactccaggcagaagagaaagagcaccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atttgtaaatgtaaacctttctaccattattactccaggcagaagagaaagagcaccaag 575
Query: 541 tgcagccaccattccccacaagttttcatttccatattcagggggtagagatgggtacac 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 574 tgcagccaccattccccacaagttttcatttgcatattcagggggtagagatgggtacac 515
Query: 601 ggggaagcccaggagttaaaaaaaaattggtaatgaacctggtttaacaatggagtgata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggggaagcccaggagttaaaaaaaaattggtaatgaacctggtttaacaatggagtgata 455
Query: 661 attggttcaaggtacttaaaaagatcaaaatgactttgtaatatgacgatgttaacatcc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attggttcaaggtacttaaaaagatcaaaatgactttgtaatatgacgatgttaacatcc 395
Query: 721 tattaaggatgttcataagttagtactgttata 753
|||||||||||||||||||||||||||||||||
Sbjct: 394 tattaaggatgttcataagttagtactgttata 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1153
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1143
Effective search space: 849249
Effective search space used: 849249
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
