Query= MSMg01no062_o07.b1 MSMg01no062_o07.b1 CHROMAT_FILE:
MSMg01no062_o07.b1 PHD_FILE: MSMg01no062_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:57 2005
(798 letters)
>mm_chr2_8865531_8866728
Length = 1198
Score = 1446 bits (748), Expect = 0.0
Identities = 775/784 (98%), Gaps = 1/784 (0%)
Strand = Plus / Plus
Query: 16 gaattcaaccatcatatcaactccttaaa-ctagctaccattcactatatatgagatctg 74
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct: 215 gaattcaaccatcatatcaactactcaaaactagctaccattcactatatatgagatctg 274
Query: 75 tagccgtgttgccttttcaattcctgcagcaaataacagagggcactttccttataaaga 134
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 275 taggggtgttgccttttcaatttttgcagcaaataacagagggcactttccttataaaga 334
Query: 135 tagaaacaggaatataaacattaaaacctcttccaaagcaagactaatatcatgagatgt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagaaacaggaatataaacattaaaacctcttccaaagcaagactaatatcatgagatgt 394
Query: 195 atttggatttgaacctaaggtgctcagaatctaaaactacacgttgcctattagactatt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atttggatttgaacctaaggtgctcagaatctaaaactacacgttgcctattagactatt 454
Query: 255 ttaaataatccttttcacccagaactgaaaccaaaaatatatcttcttattctcccagat 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttaaataatccttttcacccagaactgaaaccaaaaatatatcttcttattctcccagat 514
Query: 315 ttttaatagtacaactctttgcttgcatcttaatattttaaataaatattgctttaagta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttttaatagtacaactctttgcttgcatcttaatattttaaataaatattgctttaagta 574
Query: 375 aactaagccaagcatttagtattctctagaaaatcatgctgatattaagaaggctttggg 434
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aactaagccaagcatctagtattctctagaaaatcatgctgatattaagaaggctttggg 634
Query: 435 gaaagttgtcacaaataccacttctgtaaaagccaatttggtactcaaggctttagactc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaaagttgtcacaaataccacttctgtaaaagccaatttggtactcaaggctttagactc 694
Query: 495 attgtgagctgctaagtccatgtggagaccaaagtgtgagttaattaatgacataggaga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 attgtgagctgctaagtccatgtggagaccaaagtgtgagttaattaatgacataggaga 754
Query: 555 cagatgctacatatgcgtgaggagaaacagaacaagaggaagctctgtttatatcttcct 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagatgctacatatgcgtgaggagaaacagaacaagaggaagctctgtttatatcttcct 814
Query: 615 cggttgtctagaccactggaaataaagacctgtttctattttggtttcatcattacaatg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cggttgtctagaccactggaaataaagacctgtttctattttggtttcatcattacaatg 874
Query: 675 cccatcgtttgaaagaatacaaaattaacatagatagtgaacaactagaagaccagcttg 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cccatcgtttgaaagaatacaaaattaacatagatagtgaacaactagaagaccagcttg 934
Query: 735 actggtgacagactggcgagtgggtggatgcataggtggtggatggatggatgcagagag 794
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 actggtgacagactggcgggtgggtggatgcataggtggtggatggatggatgcagagag 994
Query: 795 gaat 798
||||
Sbjct: 995 gaat 998
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 1198
Length adjustment: 10
Effective length of query: 788
Effective length of database: 1188
Effective search space: 936144
Effective search space used: 936144
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_o07.g1 MSMg01no062_o07.g1 CHROMAT_FILE:
MSMg01no062_o07.g1 PHD_FILE: MSMg01no062_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:57 2005
(778 letters)
>mm_chr2_8963929_8965106
Length = 1178
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Minus
Query: 190 tgcttgagctgcagagatgactctgtggttaagagcacatactgcttttccagaggacct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 tgcttgagctgcagagatgactctgtggttaagagcacatactgcttttccagaggacct 1119
Query: 250 gagtttagtttgggcagctcacagcaacctgtaattcaggttgtagggaatctgacatct 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 gagtttagtttgggcagctcacagcaacctgtaattcaggttgtagggaatctgacatct 1059
Query: 310 tctctgtgtctcctggaagcctgctctctcatgctcatagccaaacatataccccccaca 369
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1058 tctctgtgtctcctggaagcctgctctctcatgctcatagccacacatataccccccaca 999
Query: 370 cacatacatacatacatacacatgtatgtgtgtgtgctctgtactgtgtacatattcctt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 cacatacatacatacatacacatgtatgtgtgtgtgctctgtactgtgtacatattcctt 939
Query: 430 taggctttcattatcaatgttttctaagtctttgttctggttggtattactctatttcta 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 taggctttcattatcaatgttttctaagtctttgttctggttggtattactctatttcta 879
Query: 490 tacctgtaatgtaaagagtgtatcttttcatgacactccgaagcgctactatatgccatt 549
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 878 tacctgtaatgtaaagagtgtatcttttcatgacactccgaagctctactatatgccatt 819
Query: 550 catatgcattttttaaatcattggcttttattgagtgattttcatttttgtcttttttat 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 catatgcattttttaaatcattggcttttattgagtgattttcatttttgtcttttttat 759
Query: 610 tacatcttattttcaaaacctgatattcagtttcctgcacattccagtctatggaagagg 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tacatcttattttcaaaacctgatattcagtttcctgcacattccagtctatggaagagg 699
Query: 670 ctttcttctgaactattttttatcttattaaggttccccccacaaattgcagttcaattg 729
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 698 ctttcttctgaactattttttatcttatcaagtttccccccacaaattgcagttcaattg 639
Query: 730 tttttcaatattttttattgaaatatattagtatgtcatgaattgattt 778
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttttcaatattttttattgaaatatattagtatgtcatgaattgattt 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1178
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1168
Effective search space: 897024
Effective search space used: 897024
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
