BAC Information

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BAC

Clone NameMSMg01-063D16
Chromosome2 (Build37)
Map Location 96,658,201 - 96,658,511
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D16.T7 (MSMg01no063_d16.b1)MSMg01-063D16.TJ (MSMg01no063_d16.g1)
ACCAG289018AG289019
length676666
length of high quality
(start - end)
313 (35 - 347)287 (55 - 341)
definitionCHROMAT_FILE: MSMg01no063_d16.b1 PHD_FILE: MSMg01no063_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:30 2005CHROMAT_FILE: MSMg01no063_d16.g1 PHD_FILE: MSMg01no063_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACACA
CTAGAACTAGAGATATGGATAGTTGGATGCCACAGTGTCCGTTCTGGGAA
TTAAACCAAAGTCCTCTGCAAGAGCAGTAAGTAATTTAATCCACCAAATC
ATCTCTTTTGTCCTGATATCAATAATTCTTAAAAATAAAAATAACAGTGT
TTATCATATAAGCTATCTTGAACTATATGCGGATTTGGCATAAAAATGAA
ACCAACAGTAATACAAATGAAAATATAATAAAAGTGATATATTATAGATA
TGAATTATTTAAAGATGTACACTGATTTTGAACTAATTATTATTATATAG
ATTTCACACCCCACAATATTCTGTTCTGAAAGGGTAATTTCTCCTGCCTT
ATTGAATCACTATTCTAAGGTCATCTTTCTAGAGAAAGAAAGAGCTCAAA
CACCTTGCTCTAACAATCACTAAATATATTACAAGTGAGACTTCTTATTA
TTCCATCATATTAGATAGCAACTAATCCTTTTATAAAACCAAATTTTAAA
TCAGGGACCAATAACATGCTCAGTGCATAAAAGCATCACAGTCTCACACT
TGTGAACGGAGTTCAACCCAGAGATCCGCATGGGTAGTAGAAAAGAATCA
ATTATGTTAGTTGTACTTTGATCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAACACCCCGCTCTCAACAATGGACAGGTCACTGAAAAGAAACTAAA
CAGAGACACAGTGAAATTAACAGAAATTATGAACAAAATGGCTTTAATAG
ATATATATGAAGAACTGTTCACCCCAAAACAAGAAAATATAACTTCTTCT
AAGCACCTCATGGTAACTTTTCCAAAATTGACTATGTAATTGCACATAAT
ACAAGCCTCAACTGACACAAGAATATTTAAATAATTATATGCATTCTACC
AGATCACCACAGACTAAGGGTGGTCATCAATAACAAGAAAAACATAGCTG
TGCACTGAAGGTACATACCTTTAATCCCAGCACTTGGGAAGTAGAGGCAG
GCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGGGTTCCACAG
AGAATCCCGTTCTTGAAAATCCTAGATAAATAAATAAATAACATGGAAAA
CAAAAGAAAGCCCATGTACTCATAAAAAAAAGAACATGTTACTCAATGAT
AACTTGGTCAGAGAAGAAATAAAAATGTAAATGAAAAACTTTATAGAGTT
TAATGAAAATGAAGGCACAGCATTGTCAAATTTATAGGACAAAATGAGAG
CAGTGCTAAGCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d16.b1 MSMg01no063_d16.b1 CHROMAT_FILE:
MSMg01no063_d16.b1 PHD_FILE: MSMg01no063_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:30 2005
         (313 letters)



>mm_chr2_96657999_96658711
          Length = 713

 Score =  547 bits (283), Expect = e-160
 Identities = 304/311 (97%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaa-cacactagaactagagatatggatagttggatgccacagtgtccgttctg 62
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 ggaattcaaacacactagaactagagatatggatagttggatgccacagtgtcggttctg 262

                                                                       
Query: 63  ggaattaaaccaaagtcctctgcaagagcagtaagtaatttaatccaccaaatcatctct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaattaaaccaaagtcctctgcaagagcagtaagtaatttaatccaccaaatcatctct 322

                                                                       
Query: 123 tttgtcctgatatcaataattcttaaaaataaaaataacagtgtttatcatataagctat 182
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 323 tttgtcctgatatcaataattcttaaaaataaaaataacaatgttcatcatataagctat 382

                                                                       
Query: 183 cttgaactatatgcggatttggcataaaaatgaaaccaacagtaatacaaatgaaaatat 242
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 cttgaactatatgtggatttggcataaaaatgaaaccaacaataatacaaatgaaaatat 442

                                                                       
Query: 243 aataaaagtgatatattatagatatgaattatttaaagatgtacactgattttgaactaa 302
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aataaaagtgatattttatagatatgaattatttaaagatgtacactgattttgaactaa 502

                      
Query: 303 ttattattata 313
           |||||||||||
Sbjct: 503 ttattattata 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)