BAC Information

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BAC

Clone NameMSMg01-063E18
Chromosome2 (Build37)
Map Location 119,971,773 - 120,077,418
singlet/doubletdoublet
Overlap geneEhd4, Pla2g4e, LOC100043635
Upstream gene1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5
Downstream genePla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E18.T7 (MSMg01no063_e18.b1)MSMg01-063E18.TJ (MSMg01no063_e18.g1)
ACCAG289070AG289071
length702694
length of high quality
(start - end)
502 (41 - 542)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no063_e18.b1 PHD_FILE: MSMg01no063_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:36 2005CHROMAT_FILE: MSMg01no063_e18.g1 PHD_FILE: MSMg01no063_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,076,976 - 120,077,418)(119,971,773 - 119,972,057)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCACTCTGTATACCAGGCTGGCCTCGAACTTAGAAATCCACCTGCCTCTG
CCTCCCAAGTGCTGGGATTACAGTTGTGTGCCACCACTGCTCGGCTGTTT
GTTTATTTTTTTGTTTTTTGGTTTTGTTCTTGTTTTTTGAGTTAGGGTCT
GCTATGTAGTCTAGACTGCTATGTTGACATTGACATCCTAATCCTCCTGC
CTCAGATTCCCAAATGTTGGGATCATAGGAGTGTGCTACTATGCCTGGCC
ATAGTCGGATGGTGAGCGTTCCCCAAGGCCCTTGTGCTAAAGGCCACCAC
ACTCTTGGGAGGTGATGGCGCCTGTAGTGGGTAAAGCCCAGTGGAAGAAG
TTAGGCTTTTGCAGGTGGTTCTTGAAGGAGATACTGGCTTCTGCACACCT
CACTCTGCTTTCTGACCACTGAGATGCACTGCCTCTTCCAGCACTTGCTT
CTTTCATGATGTGCTGTGCTAGCACAGTCCCCAAGATCATGAAGAGGATC
CAGAAAGCCTCTGAAGCTGTAACCCATAGGAGCCCTACCTTCTCCTAACG
TGATGGTTTCAGTTATTTTATCACACCGTCACTAATACAAGCTCCATCAG
AACAATTTGTTTGCGAAGGGTGTGATACTGCTGCTTCGGCAACCACTTTC
CC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAATATAATAACAAAGAGAAAGGTCCC
AAATGACCTCATATTAAACAACAGCCTATGAGGAAACTTACTTAATAGGA
AATGGAAATTCGGCAAAGTTCACAGAATTCACAAAGGAATAAAGATAGTA
ACTATTTTATATGCTCAATCTTTTTTTTGTTTGTTTGTTTTGTTTTTTGT
TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT
TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
CGAGTGCTGTTATTAAAGGCGTGCAATCACCATGCCCGGTTTATATGCTG
AACCTTACCAGCTTTTTAAAAAGCAAATTTAAAAAAATGTTTTTCCTATC
AAACTTACTGGCAGCCTAGTAAAGATGGGATGCCGATACGCATTTCCTGT
GGGAGTTTAAATTGAAGTAACCTTTCTGAAAAATAGTATGTATTCATGGA
CACTGATAGATATAATTTAGTAATATACATAACCCCTGGAAAGATAGTGA
GGTGTCTTTGCATGTATACATAGGTGTGTGTGTGTGTGTGTGTATACAGA
TGCACATATGTGCCTGTGAGCTTGGGTGACATTCCTCCAGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e18.b1 MSMg01no063_e18.b1 CHROMAT_FILE:
MSMg01no063_e18.b1 PHD_FILE: MSMg01no063_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:36 2005
         (502 letters)



>mm_chr2_120076517_120077418
          Length = 902

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 60  gcctcccaagtgctgggattacagttgtgtgccaccactgctcggctgtttgtttatttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gcctcccaagtgctgggattacagttgtgtgccaccactgctcggctgtttgtttatttt 843

                                                                       
Query: 120 tttgttttttggttttgttcttgttttttgagttagggtctgctatgtagtctagactgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tttgttttttggttttgttcttgttttttgagttagggtctgctatgtagtctagactgc 783

                                                                       
Query: 180 tatgttgacattgacatcctaatcctcctgcctcagattcccaaatgttgggatcatagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tatgttgacattgacatcctaatcctcctgcctcagattcccaaatgttgggatcatagg 723

                                                                       
Query: 240 agtgtgctactatgcctggccatagtcggatggtgagcgttccccaaggcccttgtgcta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agtgtgctactatgcctggccatagtcggatggtgagcgttccccaaggcccttgtgcta 663

                                                                       
Query: 300 aaggccaccacactcttgggaggtgatggcgcctgtagtgggtaaagcccagtggaagaa 359
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 662 aaggccaccacactcttgggaggtgatggtgcctgtagtgggtaaagcccagtggaagaa 603

                                                                       
Query: 360 gttaggcttttgcaggtggttcttgaaggagatactggcttctgcacacctcactctgct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gttaggcttttgcaggtggttcttgaaggagatactggcttctgcacacctcactctgct 543

                                                                       
Query: 420 ttctgaccactgagatgcactgcctcttccagcacttgcttctttcatgatgtgctgtgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttctgaccactgagatgcactgcctcttccagcacttgcttctttcatgatgtgctgtgc 483

                                  
Query: 480 tagcacagtccccaagatcatga 502
           |||||||||||||||||||||||
Sbjct: 482 tagcacagtccccaagatcatga 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no063_e18.g1 MSMg01no063_e18.g1 CHROMAT_FILE:
MSMg01no063_e18.g1 PHD_FILE: MSMg01no063_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:36 2005
         (285 letters)



>mm_chr2_119971573_119972257
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatataataacaaagagaaaggtcccaaatgacctcatattaaacaacagcctatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatataataacaaagagaaaggtcccaaatgacctcatattaaacaacagcctatga 260

                                                                       
Query: 61  ggaaacttacttaataggaaatggaaattcggcaaagttcacagaattcacaaaggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaacttacttaataggaaatggaaattcggcaaagttcacagaattcacaaaggaata 320

                                                                       
Query: 121 aagatagtaactattttatatgctcaatcttttttttgtttgtttgttttgttttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatagtaactattttatatgctcaatcttttttttgtttgtttgttttgttttttgtt 380

                                                                       
Query: 181 tttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccag 440

                                                        
Query: 241 gctggcctcgaactcagaaatccgcctgcctctgcctcccgagtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggcctcgaactcagaaatccgcctgcctctgcctcccgagtg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)