Query= MSMg01no063_f03.b1 MSMg01no063_f03.b1 CHROMAT_FILE:
MSMg01no063_f03.b1 PHD_FILE: MSMg01no063_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
(435 letters)
>mm_chr2_19063913_19064747
Length = 835
Score = 833 bits (431), Expect = 0.0
Identities = 434/435 (99%)
Strand = Plus / Plus
Query: 1 aaatatccattagctgctttcagagaactgtttggagaggaaatccactctaaggaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatccattagctgctttcagagaactgtttggagaggaaatccactctaaggaagtg 260
Query: 61 accttgatgagctgtttttagtggccaaagacatttaagaaaataaatagcaaactcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttgatgagctgtttttagtggccaaagacatttaagaaaataaatagcaaactcaat 320
Query: 121 tttgttttttgtgttgctgtgactaaagataacttccctactcagcctagtacactaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgttttttgtgttgctgtgactaaagataacttccctactcagcctagtacactaact 380
Query: 181 tgcacacccttgtctatgtaagaggcttctggggaaatccagactaagaaaggagaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacccttgtctatgtaagaggcttctggggaaatccagactaagaaaggagaggga 440
Query: 241 gggtgatcagtaagagggagatcaagtgtccagacatgaagggaggtgacagcagagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgatcagtaagagggagatcaagtgtccagacatgaagggaggtgacagcagagact 500
Query: 301 ctagtgcctgagaaacacccgagagggcaccgtgcttccccaaggacagattgctctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagtgcctgagaaacacccgagagggcaccgtgcttccccaaggacagattgctctggg 560
Query: 361 ctggagccgatttattttcattttaaaaggtcaagatgacctcagctgacatctatgaaa 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggagccaatttattttcattttaaaaggtcaagatgacctcagctgacatctatgaaa 620
Query: 421 taaataacacttaaa 435
|||||||||||||||
Sbjct: 621 taaataacacttaaa 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_f03.g1 MSMg01no063_f03.g1 CHROMAT_FILE:
MSMg01no063_f03.g1 PHD_FILE: MSMg01no063_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
(470 letters)
>mm_chr2_19195804_19196675
Length = 872
Score = 851 bits (440), Expect = 0.0
Identities = 464/472 (98%), Gaps = 2/472 (0%)
Strand = Plus / Minus
Query: 1 tttccattttgggggcaactttgaatctaattctggtcagatcc-ccagatggcagtgat 59
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 672 tttccattttgggggcaactttgaatctaattctggtcagatccaacagatggcagtgat 613
Query: 60 gttataaactgtttaaaatactctcattgcgtgtaggatcgactactcagaaggatgtca 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 612 gttataaactgtttaaaatactctcattgcatgtaggatcgactactcagaaggatgtca 553
Query: 120 accgcaaatcatttgctccatacttgtataaattatttaagaatttggaatgattaattg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 accgcaaatcatttgctccatacttgtataaattatttaagaatttggaatgattaattg 493
Query: 180 ggcagaaaagtacacagtaaataaaacatgaaattcaactggagatatttcctacattca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcagaaaagtacacagtaaataaaacatgaaattcaactggagatatttcctacattca 433
Query: 240 caaattaaatggcttctcctttccaaaaagcattatacaaagagaactgtccagcatatt 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 432 caaattaaatggcttctcctttccaaaaagcattatacacagagaactgtccagtatatt 373
Query: 300 accagcatagta-ggaaggagcgctgcccgaaattagccgaggggactacctattcatga 358
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 accagcatagtaaggaaggagcgctgcccgaaattagccgagggggctacctattcatga 313
Query: 359 ctgcctattttactgcttcatctcattttcatctttcagacaggcttgtcttcactgcct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctgcctattttactgcttcatctcattttcatctttcagacaggcttgtcttcactgcct 253
Query: 419 cctactttatttacccacttaaaataatttctttctcctttcatttctaaca 470
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 252 cctactttatttacccacttaaaataatttctttttcctttcatttctaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 872
Length adjustment: 10
Effective length of query: 460
Effective length of database: 862
Effective search space: 396520
Effective search space used: 396520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
