BAC Information

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BAC

Clone NameMSMg01-063F04
Chromosome2 (Build37)
Map Location 59,596,525 - 59,596,803
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneUpp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F04.T7 (MSMg01no063_f04.b1)MSMg01-063F04.TJ (MSMg01no063_f04.g1)
ACCAG289090AG289091
length680676
length of high quality
(start - end)
311 (46 - 356)279 (75 - 353)
definitionCHROMAT_FILE: MSMg01no063_f04.b1 PHD_FILE: MSMg01no063_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:38 2005CHROMAT_FILE: MSMg01no063_f04.g1 PHD_FILE: MSMg01no063_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGTATCTACCTTGATTCCTTCAAGAGGGACAGACACACACATT
TACCAACTTTTATGGTAGGCTTGTAATTGTTTTATTGCTGCTGTGGAGGT
TTGACTAGGAATGCCATAGACTCACATGGTTGAATGCTTGACCCGTAGGA
GGTGTGGCCTTGTTGGAGTAGGTGTGTCACTCTACCCTTGCTGGAGGGAG
TGTGTCACTGGGGGTAAAGGCAGGCCTTGAAGTCTAAGATGCTCAAGCTA
GGCCTAGTGTGGCAGTCGTTTCGGATGAAGATACAGAACTGTAAGCTGCT
TCGCCATTTCTGTGTCTGCACCTGCGCGCTGCCATGCTGCCATGCTGCCA
TGCTGCCATGCTGCTTTCTGTGATGATAATGGACCTAACCTTGCAACTGT
AAGCCAGCCCCAATTAAATGTTTATAAGGGTTGCTGTGGTTAGGCTGTGT
TTTTAGCATTGAAACCCTAAGACTATTAATGTTTTTAATCACTTACTATG
ACTAATTTATAAATTACATTTTATTATAGGTTTTGTGTGTGTGTGTGTAT
GTGTACAGGTAGACTTTGGTACTGAGGGTTTTTTTTTTTTAAGAATTATT
TATTTATTATATGTAAATACACTTCAGACA
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTAGCTAAACAAATCTCTGTCAAT
TGCCCAAGGGGAAAAAAACCTCCCAAATACATTTGATTCAGTGAAGCATT
TTTGCAAGAGACTCTCAGGTTTCTTTCAGAAATGGAGAATGCTACTTACT
ATGCATAGTCTTTAGGGAAAGATGCAGACATCATGGAAAAGGTACTCTTA
CCAGTCGCACTGGGCTCTGAGGGCTTGGACCCTTCTCCGAACGGGATCAT
AACTGGATCTCCCGGCACCCTGGGGCTTTCCACATACTTGGGCTTCCTGA
CGGTATCTGTTTTAGGCCACCATCTGAGTGTAGCTAATTTTTTCCAGATG
CAAACAGAGCTTCAGAACATACAATGTGTGTCCTTACCAGGACCCAAACA
CGCCTAAAGGCTGGCCCTTCCCTCCCTTGAATACACAGGCTGTCAGTTCA
GAGCAGACACAAGAATGTCCAGTCTGGCCTGCCAACGGAGACCAGGGCGA
GCTCCGTTTGGAGAACGTAAACTCTGACCGAAACCGACGCCACTCTCCTC
TGCTGCAGTTTCCGTGGCTGTCCTTACTGTGTGACAATAGGTGGTTTTGA
CGTGTTCAGACCAACCAGTGGTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f04.g1 MSMg01no063_f04.g1 CHROMAT_FILE:
MSMg01no063_f04.g1 PHD_FILE: MSMg01no063_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:38 2005
         (279 letters)



>mm_chr2_59596325_59597003
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagctaaacaaatctctgtcaattgcccaaggggaaaaaaacctcccaaatacattt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cattagctaaacaaacctctgtcaattgcccaaggggaaaaaaacctcccaaatacattt 420

                                                                       
Query: 61  gattcagtgaagcatttttgcaagagactctcaggtttctttcagaaatggagaatgcta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gattcagtgaagcattcttgcaagagactctcaggtttctttcagaaatggagaatgcta 360

                                                                       
Query: 121 cttactatgcatagtctttagggaaagatgcagacatcatggaaaaggtactcttaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cttactatgcatagtctttagggaaagatgcagacatcatggaaaaggtactcttaccag 300

                                                                       
Query: 181 tcgcactgggctctgagggcttggacccttctccgaacgggatcataactggatctcccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcgcactgggctctgagggcttggacccttctccgaacgggatcataactggatctcccg 240

                                                  
Query: 241 gcaccctggggctttccacatacttgggcttcctgacgg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcaccctggggctttccacatacttgggcttcctgacgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)