BAC Information

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BAC

Clone NameMSMg01-063H06
Chromosome2 (Build37)
Map Location 20,426,205 - 20,426,485
singlet/doubletsinglet
Overlap geneEtl4
Upstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H06.T7 (MSMg01no063_h06.b1)MSMg01-063H06.TJ (MSMg01no063_h06.g1)
ACCAG289190AG289191
length772772
length of high quality
(start - end)
314 (106 - 419)283 (138 - 420)
definitionCHROMAT_FILE: MSMg01no063_h06.b1 PHD_FILE: MSMg01no063_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:49 2005CHROMAT_FILE: MSMg01no063_h06.g1 PHD_FILE: MSMg01no063_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNNNNNNNNNNNNNNNNTTTTNTTTTTTCCCCCCNCCNCCCTTTC
TTATAATATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTGAGATCCCCGTATGTTTTTTGTATATTTTGATA
GCATTCCTGTGTACATGGTTTCCCAGCTACCTATTCTAGTCCCTGCTCTT
TCTTGAGCATAAATCCAGAAAAAAACTCCTAAATGACATCAATTTGCTTG
ATTAATTAGTTCAGAAACCGCCACACCACTTCTCCTGGTGGCAGTGCCAT
TTTGCAGTCTTTCCATCAGTGAATACATACTCCAGTTTTTATGCTTCCTC
TCAACTCATTACTTTTGAATTTGCGTCGGCATTCTTTTTCATCCTCAACC
CTAGTGAGCATGAAGTGTCACTCAGCACAATGTTGACTTGTGGTTCCTTA
ATAATAAGGATTTCAAGTGGTTGCTTACGTGTTTATGAGCCTGGAACAAC
TGTAAAGATTTACGATTTCATAGTCCAAGAATTTTCTTCTTTCTCTATAT
ATTTGACTTATGCATAACGTATGTGTATAGCTCAATACGACTATATATAA
GGATAATATAGGGAAAAATGTGACTTTTTAACGATGATTCAAACAACTCA
CATTTCCACCTGATGATGGAACCATGTGCAATGACCCTCAATGGTACTTC
AAGGAATATGACTTCCCTCCTTACTATTCCTTGCTTACTTCATGAAACGC
TTTTACCAAAACTCCTTATAAA
NNNNNNNNNNNNNNNNNNNNNNNTTTTAAAANNTTCTCCCCNCCCCCCTT
CCTTTNNNCCATCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTTTGGCTTG
TTGTGGGTGCCCTCTTTGGGGTGAACTGACAGTTGTTCATGGCTCATCAA
GCAAAGTCACAAATGCACATAGATCTTGACTGTTTTGTTTCTGCATCCTG
GGCCTGCAAGGAGTGATGAGAATGAGCAGCTGACAGAAATGATGTCTGCA
TGCACTGAGTTATGAGGAGGGAGGGCACTTAGTGACATCGACAAAGAACA
GAGAAGAATGAGCGGTCACCTTATGGAAGAACAGAAAAACCTGGCAGCAG
AGAACTACTAGAAATTGGCAGGGTGCTTCGCACGCCAACACACATGTCAA
GTCTAGAGAGTTTTAAATGTAATGGCTAATTCCTTGAAAGAACATGTATG
GTAAGGGATGAGGGGTGGCATCAACTCCTGGAGATCATAAAGTAATTTCT
AACAGTTAATGGCGAGAAGGGGATAGAGATGACCACAAGATGGATAAATG
AAATGAGGCCCAATCTTGAGGGTTTTTACAATTTACCTTGCATCTAACAT
ATTGCAACAATCGAATCAAAGTGCATCCGCAATTAATTGCTCATTAAACA
TGGCTCCCTTGAATTGAAAAAACTGTATGCAGATTCTAACGTCTTTATCA
ATTCAAGCCAATTGCTCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h06.g1 MSMg01no063_h06.g1 CHROMAT_FILE:
MSMg01no063_h06.g1 PHD_FILE: MSMg01no063_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:49 2005
         (283 letters)



>mm_chr2_20426005_20426687
          Length = 683

 Score =  497 bits (257), Expect = e-145
 Identities = 275/281 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctttggcttgttgtgggtgccctctttggggtgaactgacagttgttcatggctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatctttggcttgttgtgggtgccctctttggggtgaactgacagttgttcatggctcat 422

                                                                       
Query: 61  caagcaaagtcacaaatgcacatagatcttgactgttttgtttctgcatcctgggcctgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 caagcaaagtcacaaatgcacatagatcttgactgttttgtttctgcatcctaggcctgc 362

                                                                       
Query: 121 aaggagtgatgagaatgagcagctgacagaaatgatgtctgcatgcactgagttatgagg 180
           |||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct: 361 aaggagtgatgagaatgagcagctgacagaaatgatgtctgcgtgcactctgttatgagg 302

                                                                       
Query: 181 agggagggcacttagtgacatcgacaaagaacagagaagaatgagcggtcaccttatgga 240
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 301 agggagggcacttagtgacatcgacaaagaacagggaagaatgagcggccaccttatgga 242

                                                    
Query: 241 agaacagaaaaacctggcagcagagaactactagaaattgg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaacagaaaaacctggcagcagagaactactagaaattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)