BAC Information

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BAC

Clone NameMSMg01-063H23
Chromosome2 (Build37)
Map Location 3,894,778 - 3,895,128
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257
Downstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H23.T7 (MSMg01no063_h23.b1)MSMg01-063H23.TJ (MSMg01no063_h23.g1)
ACCAG289224AG289225
length682668
length of high quality
(start - end)
508 (67 - 574)352 (55 - 406)
definitionCHROMAT_FILE: MSMg01no063_h23.b1 PHD_FILE: MSMg01no063_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:53 2005CHROMAT_FILE: MSMg01no063_h23.g1 PHD_FILE: MSMg01no063_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAGATCCCGGGATTGCATCGACCCCCCGGTGTGGCACCCTGGACGC
CACTGGAGACCGAGGAATCATAACAGGGGCCCTGATCCTTAGGAGTGTTT
CCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAGTATGC
CTGTCCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCCTCTCCCGGCC
CTCCACACCCTATTGGTACAGTATGACCGGGGCAAACATAGAAGTCATAC
AGTCTTGTCCTTCTTCTTCCCCCGGGAGTGCGGCAACCATCCCCAATATC
GGTTTCTGGTTCATCCCAGCAGTCTCCTACTAAATCACACAGGTCAAAAT
ATAGTTTAGGGAAGGTGTCTGTCATCGTCCCCAGGAGGGAGGTGGCGTTA
GCTGTTTGTCCTGTCATTAGGTTGGTAACTCTCCAAGTAACATTGAAGAT
CTGGTGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACCAAGATCC
CCATAACTATTAGGGGGCCCCACGGGTTAATCTTATCTTTAAGGGGTTTT
GAGAACGCTGGACCTTCCATGCTGTTCCGGCTGTAGGAGTTGTCGCCGCC
TTTACGTGAGCGGCGTGTTATCCCGCCGAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTGATCTCTCCATGCATACCTGTAGACACACATGCACAAAGATAT
GCAAAGCAAATAAATATAATTAGAAAAAAATGAGGATGTTACTTAATATG
CATTTTTACTAAAATTTACAGGGAGAATGTTACTTATTGAATACTAAAAT
ATTAGAGGGGAACTGAGCCAATAAATTATACATGTTATATAAAAAATTTT
ATCCCAAGATATTTTTTAAGTACAACATTATTTAAAACATGAAGAAACTA
AACAAGTCATACAAGGAAAAAAGATGTGATGAACACATTCTCTCTCAGAT
ATCTGCATGGCATCAGTGTTTACAACTTGGTATTTATTGGTTAATTCTCA
ACTCAACAGTAATTTATCCTAGGGCATCCTATGGGCCTATTTGGGGCTAA
TACGGACTTTAAACAGTGTTTGTACTTGAGAAATACAAAACTCAGCAGCT
AGCAGCTGGCACTCCAGTCCTCGTCTTGGTAGATAACAGGAGGTTCTATG
GGACTCTGAGCATGTTCTAAGAATAAGAGGCAATTGAGTTGCGGACAAGC
AAATAATATAAACACATTCATTCCCAGCATTTGCTCCCAACAGTTTCCAA
ATTTATTTATAGCCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h23.g1 MSMg01no063_h23.g1 CHROMAT_FILE:
MSMg01no063_h23.g1 PHD_FILE: MSMg01no063_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:53 2005
         (352 letters)



>mm_chr2_3894578_3895329
          Length = 752

 Score =  648 bits (335), Expect = 0.0
 Identities = 347/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatctctccatgcatacctgtagacacacatgcacaaagatatgcaaagcaaataaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctgatctctccatgcatatctgtagacacacatgcacaaagatatgcaaagcaaataaa 492

                                                                       
Query: 61  tataattagaaaaaaatgaggatgttacttaatatgcatttttactaaaatttacaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tataattagaaaaaaatgaggatgttacttaatatgcatttttactaaaatttacaggga 432

                                                                       
Query: 121 gaatgttacttattgaatactaaaatattagaggggaactgagccaataaattatacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaatgttacttattgaatactaaaatattagaggggaactgagccaataaattatacatg 372

                                                                       
Query: 181 ttatataaaaaattttatcccaagatattttttaagtacaacattatttaaaacatgaag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 ttatataaaaaattttatcccaagataatttttaagtacaacattatttaaaacatgaag 312

                                                                       
Query: 241 aaactaaacaagtcatacaaggaaaaaagatgtgatgaacacattctctctcagatatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaactaaacaagtcatacaaggaaaaaagatgtgatgaacacattctctctcagatatct 252

                                                              
Query: 301 gcatggcatcagtgtttacaacttggtatttattggttaattctcaactca 351
           | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 251 gtatggcatcagtgtttacaacttgttatttattggttaattctcaactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)