BAC Information

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BAC

Clone NameMSMg01-063J11
Chromosome2 (Build37)
Map Location 56,114,792 - 56,180,292
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J11.T7 (MSMg01no063_j11.b1)MSMg01-063J11.TJ (MSMg01no063_j11.g1)
ACCAG289292AG289293
length700701
length of high quality
(start - end)		605 (45 - 649)598 (74 - 671)
definitionCHROMAT_FILE: MSMg01no063_j11.b1 PHD_FILE: MSMg01no063_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:00 2005CHROMAT_FILE: MSMg01no063_j11.g1 PHD_FILE: MSMg01no063_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,179,692 - 56,180,292)(56,114,792 - 56,115,386)
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTAGGATGTATGTCTCAGTAGATCAGTTATCTGTTTACTATTGT
GTCTGCTTTTATCACTTCACTTCAGCATTCACTACCTTTATATGCAGTAG
TAGTGTAGAAACTTCCTTTTAAGGACTTGGAATTTAATTTCATGTATGAA
TAGTTTCTGAAATGAAAATCTAGTTATGTTCCTTTCACTTAATATTTTTA
ATTAGAACACCAACATCAAATGATAATTAATTTTTATGAATAATTTTTCT
GTTTCTATAAATCTGGATTTACCACCCAACTATTCAATGCATAAAGAAAT
ATTTTACCTTAATCATTTTTTAAGAGACTAACAGTGCAAAATATGGTCAG
ATATATTACACAACAGACTTGGAATGCTCTGCCCTTTTCCAGCTGCTTGA
TCTTTTTCTGTCTGTTCCCCTATTCTACTTACACAGGAATAGCTAATTAT
TCTCTAGACATTTTATCAGTTACCGATTGTCATAATAATGCCATAGAATA
AACAAACAGATAGTTGACACAACAGCATTAAAGTTAAGAATCTAAATGGG
TCAGCTGAGTTTGGCTGGACTTTTCATCTATGCAATTTAGGTGGCATCTA
AGAAGGCCAATGTATTTCCTCTAACCAATGTTTTTCATTATTTAATAGAT


CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCTTTT
AAGGGGGCTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATA
TATTGGATATTAGTCTCCTATCTGATTTAAGATCTGACTTCAATTATTAA
ATTAAACTTTATAATCGTTTAAAATCAGATATATGTAATTGTGACAATGT
TTTACAATATGGGACAAAAATAGTATGGTAAATCAATTACATATAAAAAT
AACATAAACCATGTTTATAAATCCCAAACAATAAATCTGAAAAGAAAGGA
GAAATACTAATACATTTAATTTATATAATAAAAGAAATAATAAATCTATT
GATTGTCAAGACTGATGGAAGAAACATATCCCTGCGTTAGTTCTCTGAGC
CCTGGTCTTGCAGATATGTAACATAATGCACCAAACTTGTTATGAGTGGC
CCACAGCAGAGACACAGAGAAAGGGAATTATCCTTGCCAAACCTACCAGG
TGAGTGGCTTATGTGTGGCCAAAAGGAGTGAAAAAGATAGTCTGTATGCT
GTGAGTTGTCCCACAAGCTTACCAAACAGGATAGAAGACTCAGGTATCAG
GGGCTTTCTTTTGGGCCCTTGGGTAAGCCATCTTAGACAGAGCTGAAGCA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j11.b1 MSMg01no063_j11.b1 CHROMAT_FILE:
MSMg01no063_j11.b1 PHD_FILE: MSMg01no063_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:00 2005
         (605 letters)



>mm_chr2_56179488_56180492
          Length = 1005

 Score = 1131 bits (585), Expect = 0.0
 Identities = 597/601 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtaggatgtatgtctcagtagatcagttatctgtttactattgtgtctgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattcaagtaggatgtatgtctcagtagatcagttatctgtttactattgtgtctgctt 746

                                                                       
Query: 65  ttatcacttcacttcagcattcactacctttatatgcagtagtagtgtagaaacttcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttatcacttcacttcagcattcactacctttatatgcagtagtagtgtagaaacttcctt 686

                                                                       
Query: 125 ttaaggacttggaatttaatttcatgtatgaatagtttctgaaatgaaaatctagttatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaaggacttggaatttaatttcatgtatgaatagtttctgaaatgaaaatctagttatg 626

                                                                       
Query: 185 ttcctttcacttaatatttttaattagaacaccaacatcaaatgataattaatttttatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 ttcctttcacttaatatttttaattagaacaccaacatcaaatgataattaatttctatg 566

                                                                       
Query: 245 aataatttttctgtttctataaatctggatttaccacccaactattcaatgcataaagaa 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 aataatttttctgtttctataaatctggatttaccacccaactactcaatgcataaagaa 506

                                                                       
Query: 305 atattttaccttaatcattttttaagagactaacagtgcaaaatatggtcagatatatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atattttaccttaatcattttttaagagactaacagtgcaaaatatggtcagatatatta 446

                                                                       
Query: 365 cacaacagacttggaatgctctgcccttttccagctgcttgatctttttctgtctgttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 cacaacagacttggaatgctctgcccttttccagctgcttgatctttttctgtctgttct 386

                                                                       
Query: 425 cctattctacttacacaggaatagctaattattctctagacattttatcagttaccgatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctattctacttacacaggaatagctaattattctctagacattttatcagttaccgatt 326

                                                                       
Query: 485 gtcataataatgccatagaataaacaaacagatagttgacacaacagcattaaagttaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcataataatgccatagaataaacaaacagatagttgacacaacagcattaaagttaag 266

                                                                       
Query: 545 aatctaaatgggtcagctgagtttggctggacttttcatctatgcaatttaggtggcatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 aatctaaatgggtcagctgagtttggctggacttttcatctatgcaatttaggtgtcatc 206

            
Query: 605 t 605
           |
Sbjct: 205 t 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no063_j11.g1 MSMg01no063_j11.g1 CHROMAT_FILE:
MSMg01no063_j11.g1 PHD_FILE: MSMg01no063_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:01 2005
         (598 letters)



>mm_chr2_56114589_56115586
          Length = 998

 Score = 1112 bits (575), Expect = 0.0
 Identities = 590/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttcagctctgagccccatcttttaagggggctatttgattttctggagtccaccctctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttcagctctgagccccatcttttaagggggctatttgattttctggagtccaccctctt 263

                                                                       
Query: 64  gagttctttatatatattggatattagtctcctatctgatttaagatctgacttcaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagttctttatatatattggatattagtctcctatctgatttaagatctgacttcaatta 323

                                                                       
Query: 124 ttaaattaaactttataatcgtttaaaatcagatatatgtaattgtgacaatgttttaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaaattaaactttataatcgtttaaaatcagatatatgtaattgtgacaatgttttaca 383

                                                                       
Query: 184 atatgggacaaaaatagtatggtaaatcaattacatataaaaataacataaaccatgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatgggacaaaaatagtatggtaaatcaattacatataaaaataacataaaccatgttt 443

                                                                       
Query: 244 ataaatcccaaacaataaatctgaaaagaaaggagaaatactaatacatttaatttatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaatcccaaacaataaatctgaaaagaaaggagaaatactaatacatttaatttatat 503

                                                                       
Query: 304 aataaaagaaataataaatctattgattgtcaagactgatggaagaaacatatccctgcg 363
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 504 aataaaagaaataataaatctattgattatcaagactgatggaagaaacatatccctgtg 563

                                                                       
Query: 364 ttagttctctgagccctggtcttgcagatatgtaacataatgcaccaaacttgttatgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagttctctgagccctggtcttgcagatatgtaacataatgcaccaaacttgttatgag 623

                                                                       
Query: 424 tggcccacagcagagacacagagaaagggaattatccttgccaaacctaccaggtgagtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggcccacagcagagacacagagaaagggaattatccttgccaaacctaccaggtgagtg 683

                                                                       
Query: 484 gcttatgtgtggccaaaaggagtgaaaaagatagtctgtatgctgtgagttgtcccacaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcttatgtgtggccaaaaggagtgaaaaagatagtctgtatgctgtgagttgtcccacaa 743

                                                                  
Query: 544 gcttaccaaacaggatagaagactcaggtatcaggggctttcttttgggcccttg 598
           ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 744 gcttaccaaacaggaaagaatactcaggtatcaggggctttcttttgggctcttg 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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