BAC Information

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BAC

Clone NameMSMg01-063L07
Chromosome2 (Build37)
Map Location 125,217,014 - 125,217,238
singlet/doubletsinglet
Overlap geneFbn1
Upstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L07.T7 (MSMg01no063_l07.b1)MSMg01-063L07.TJ (MSMg01no063_l07.g1)
ACCAG289375AG289376
length759764
length of high quality
(start - end)
225 (198 - 422)40 (136 - 175)
definitionCHROMAT_FILE: MSMg01no063_l07.b1 PHD_FILE: MSMg01no063_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:10 2005CHROMAT_FILE: MSMg01no063_l07.g1 PHD_FILE: MSMg01no063_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNTTTTNANNTTCCCTC
CNCACTATAACCACTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTAATATTTGCAGAAGGCATGAAGTCCA
GAGCAGAGCTCTGAGGAGTTGTCTGGTCAAAATACTACCCACAAGGAGCA
GGAAGGGCAGGGATGCACAGCTTGTGGATGTCGCACAGTGACTCTGTGAG
CTGGGGCACCCTGACTTGATCATGCATTTCCCTGTGTTCGCCCATTTCGG
GCTTGAGTACCTATGTCTTTTTAAACAATACCAGGCCTCTATAAGACTAA
ATCTTCCATAGGTTCATGACATCTTTTAATTCCCAGAATGGTTCTTTACG
CAGCAGCTAGTGCATCTGTGACAACAGTGGTTGGTCACAGTCCCCTTCTA
CAGGCAGACCACAGCAGCTTACTTCTTTACTTTGGGGCTAGAATGTCCAT
AACTTTACTCACCGTCTCACATTGATTCTTACCTTGATTTTTTTGCTTCG
CTTCGCTTTTTACAGAGCGTCATTCCTTAACATTTTATTATGTTAACGTT
TATCTTTACCGGTGGTACTTCTGGAAAGCTCTCCTAACTCACTCTTGTGG
CATAATCCTTGTCTTTTTCTTTTTGACTTATCTTGTCAAGTTTCCACACA
CTGTGTTTGTCACTAAAAGTAGTAATTTCCTGGAGGAGCCATACTGGCGT
GCTTGGTCG
NNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNCCCCCCCCCCCCCCC
TTCCCCTCTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAA
CTTTTATCATGAATGGGTGTTGGATCTTGCCCAATGCTTTTTCTGCATCC
AACGAGATGATCATGTGTGTTTTTGTCTTTGAGTTTGTTTATATAGCGGA
TTACATTGATGGATTTTCGTATATTAAACCATCCTTGCATTCCTGTAATA
AAACCTACTTGGCCAGGATGGATGATTGCTTTAATGTTTTCTTGCATTCG
GTTAGCGAGAATTTTATTGAGGATTTTTGCCTCGATATTCATGATATAAA
TTGGTCTGAAGTTCTCTATCTTTGTTGCACTCCTCCTGCGTTTTAGGTAT
CACAGCAATACTGGCTTCATAAAATGACTTGCTTACAGAACTTTCTACTT
CTATCTTGTGAAAAAGCTTGTGCAAAACTGGAATTATACCTTCTTTGAAA
GTCCTGAAAGAACTCTGTATCTAACCCGACTGGCCCTGGGTTTTTTTTGG
CTTGCCAGACAACTTTTAACTGCCTTCTATTTCTCCAGTCCCACATTTCA
CTTCTTTACACAAACCCATCTTTCTTCTTGTATTCTACCTTTTTTACCTT
GATATTCTGTTCCTCAAAATCTTGTCATTTTTCCCCCTATTTTATCCAAT
TTTTTCCTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l07.b1 MSMg01no063_l07.b1 CHROMAT_FILE:
MSMg01no063_l07.b1 PHD_FILE: MSMg01no063_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:10 2005
         (225 letters)



>mm_chr2_125216814_125217438
          Length = 625

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaggaagggcagggatgcacagcttgtggatgtcgcacagtgactctgtgagctggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaggaagggcagggatgcacagcttgtggatgtcgcacagtgactctgtgagctggggc 260

                                                                       
Query: 61  accctgacttgatcatgcatttccctgtgttcgcccatttcgggcttgagtacctatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 accctgacttgatcatgcatttccctgtgttcgcccatttcgggcttgagtacttatgtc 320

                                                                       
Query: 121 tttttaaacaataccaggcctctataagactaaatcttccataggttcatgacatctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaaacaataccaggcctctataagactaaatcttccataggttcatgacatctttt 380

                                                        
Query: 181 aattcccagaatggttctttacgcagcagctagtgcatctgtgac 225
           |||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct: 381 aatttccagaatggttctttaggcagtagctagtgcatctgtgac 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)