BAC Information

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BAC

Clone NameMSMg01-063N19
Chromosome2 (Build37)
Map Location 141,061,170 - 141,061,453
singlet/doubletsinglet
Overlap genenone
Upstream geneSel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063N19.T7 (MSMg01no063_n19.b1)MSMg01-063N19.TJ (MSMg01no063_n19.g1)
ACCAG289493AG289494
length677676
length of high quality
(start - end)
349 (39 - 387)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no063_n19.b1 PHD_FILE: MSMg01no063_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:23 2005CHROMAT_FILE: MSMg01no063_n19.g1 PHD_FILE: MSMg01no063_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TCTGTAGCTCTCCTTATTAAAGATGCTGGCAAAAATGTGGAGAAGGAGGA
ACACTACTTCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAA
ATCAGTTTGACTGTTCCTCAGAAAATTGAACATAGTACTATCTGACGACC
CAGCAATACTACTCCTGGGCATATACCCAGAAGATCCTCCAACATGTAAT
AAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAT
TGTGGTACATTTACACAATGGAGTACTACTCAGTTATTAACAACAATGAA
TTTATGAAATTCTTAGGCAAATGGATGTATCTGGAGGATATCATCGTGAG
TGAAGTACCCCAATCACAAAAGACCACATGTGATATACACTCACTGATAA
GTGGATATTAGCCCAGAAGCTTGTAATACCCAAGATACAATTCACAAACG
ACATGTAACTCACGATAGAACGAAGAACAAAGCGTGGATAATTCGAAACT
TCTTAAAATGGGCAATAACACATCCTATGTTACGAGCTCCCCGAGAAATA
CTATGGAATACATACTGAAAGACCGTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTTTGAGTTAACCCCAGCCTGGCTAAC
TACAGTAAATACATGTCCTGGGATGGAGAAGGAGTTGGCAGGTTTCCTGG
AAAACCAGATAGGTTTTCTTCTTTGTGATTATGGTGAGCTTTCTCTTGCC
CCAGGTTTAAAAGAGCATGTCTAGTCTTTAATTTAGCTTCCCTTGTTTGA
ACGTCCAGGATGGAACAAGATAATAGAGGGTTAGCAGAAGTCATTACACA
TATACTTCATATCTAAGACAGAGGTATCTCCAGGAAATCTGCATTTGTCT
ACTAGTTCCTAAATTTAAGGAGACCAGAGAGTGTCCCTTTTGAATACCAT
TTAACTGGACATGTTTAGAGAACATTAAATTTTTAAATTTCATTAGAATC
TCTGCAGGTTTTAAGTATAACCTCTTATCCTTCTCATTTATCTTGCAATT
ATTTTGTTGTTGTTTCTTTAGAATAACTTAGATTTCTAACAACTTTTGTC
TTTTTCTAGATATCCGCACCCTTACAACGTTCCAGATATTCATGGCCCCT
ATAATAAGCATACTGTGCATTTCCTAGTTTATCTACTTACCTTTCCGTAA
TAGTCTTAAAAAACATTGAAGCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_n19.g1 MSMg01no063_n19.g1 CHROMAT_FILE:
MSMg01no063_n19.g1 PHD_FILE: MSMg01no063_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:24 2005
         (284 letters)



>mm_chr2_141060970_141061653
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttgagttaaccccagcctggctaactacagtaaatacatgtcctgggatggagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttgagttaaccccagcctggctaactacagtaaatacatgtcctgggatggagaag 260

                                                                       
Query: 61  gagttggcaggtttcctggaaaaccagataggttttcttctttgtgattatggtgagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttggcaggtttcctggaaaaccagataggttttcttctttgtgattatggtgagctt 320

                                                                       
Query: 121 tctcttgccccaggtttaaaagagcatgtctagtctttaatttagcttcccttgtttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttgccccaggtttaaaagagcatgtctagtctttaatttagcttcccttgtttgaa 380

                                                                       
Query: 181 cgtccaggatggaacaagataatagagggttagcagaagtcattacacatatacttcata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cgtccaggatggaacaagataatagagggttagcagaagtcattacacatatacttcaca 440

                                                       
Query: 241 tctaagacagaggtatctccaggaaatctgcatttgtctactag 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaagacagaggtatctccaggaaatctgcatttgtctactag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)