BAC Information

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BAC

Clone NameMSMg01-064A16
Chromosome2 (Build37)
Map Location 125,860,442 - 125,860,850
singlet/doubletsinglet
Overlap geneFgf7
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2
Downstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A16.T7 (MSMg01no064_a16.b1)MSMg01-064A16.TJ (MSMg01no064_a16.g1)
ACCAG289624AG289625
length1,2611,262
length of high quality
(start - end)
424 (29 - 452)384 (70 - 453)
definitionCHROMAT_FILE: MSMg01no064_a16.b1 PHD_FILE: MSMg01no064_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:40 2005CHROMAT_FILE: MSMg01no064_a16.g1 PHD_FILE: MSMg01no064_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAGCACTGGGCGCTATAGACTCCATAGGGAGAGGATCCGCGGAATTC
ATTAGTCTATGCTTTTACATTTGTGCTTTATAATTATTTTCCCTTAAACT
ACCCAGATTTTTCAAGTTAAGTGTCAGGACCGCCCTGGAGAACCTCAAGA
GTCTCCTTCCATCCGTCCGTACTACAGCACAATTTCTGTAGATATTTTCA
CAGCTCAAAAGTCTTTCCCCCCTGACCCCACCCCAGGACAATAACCACAG
AAAGAGAAAATCTTTCAGAAAAGAGCATTGTTTTAAAGACAAATAACAGT
AACTTACTTGTTCTGTTTGGAACAGCTGGGTACACAAGAGTTCCGTGTCT
GCTGTCTGCCTCGTGCAACTTGAGCCTCTCTACTGTAGCTACAAACTATT
TCTCAGCTGAGAAATCCCCCAGCAGAATCATAATTGTTTCCATAAATCAA
CATTTTTTTTTCCCCCTCTCCGTGTGTGAGCGCGTGCGCATGAAAAAAAT
GCGTGGAGCCTTTTATTCAGAGATTTTCAATAAATACCTTTGCTGACCTC
ATTGGAAGCAATTAAAACTTAACCAGTGAGCTGTTCGTTGTCTAAAACAG
CAGAATTAGAAGGAGGCTTGTACACTGTTGAGTGGTCGTAAGGGGGAGCT
GTGGACACGGCTTCGGCTTAAATCCACAAGTGGGCATTCACGCTGTGGAA
ACAGACCTCTGATTCCCAAGCCGTTACAAAGAGAAAGGAAAATGTTAGAC
CTTTTAAACACAGAAGCTGTACAGTCTGTGAAAAACATATGTCCCTACAA
CATATATAAGGGCTTCTTAAATGTTAGATGATTTTTACAATACATTGGCA
CGCGGGAAGGTGTTAAGTGAAGGTATGTTTTTTTCTCCTTTTCTCTTTAT
TATTTCTTCTTTTTCTTATTCATTATTTATTTCTTTTTTTTTTTTACCTA
ATATTTCCTTTTCCTATTCTTTTTTTTCCTTTTTTTCTATTCTTTTATTT
TTTTTATACCTTCTCTTATCTTTGCTTATTTTTCATATTCTTTACTTCTT
TAATCTCTCTATTCCTTATTTTATATTGATTCTTTACTACTACTTCATTT
ATATTTTTTTTTATCTTATATTATATGTTATATTATTTTATATCTCTTCC
TTATCTTTTTATCCATATATTTATTTTTTTTGATATTTTTTTATTTATTC
CTTTCCTTCTTCATCCATTATTCTTTCCTAGTCTTACTCTTTCTATTATT
AACTATAATTT
NNAAAAAGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCTTAGGGCCTTGGAAGAACAAGAACAAGC
CCCATCAAAAATCAGTAGATTGAAAGAACCCCCACAATCAAGGAAGGAAT
TAATGAAATAAAAATTTAAAAATATAATGAGTTTGTGAAACAAAGAGTCA
ATTCTTTGAAACAATGAACAAGATCAATAAACTCTTAGTCAAACTAGCCA
AAAGAAAGAGAACAAAGGCTCAAATTAATGAAGTAAGAGATGAAAAGGGA
GATATGGCAGTAGATACTAGTGAAATTCAGGAAATAGTTGTGATATATTT
TAGAACTCTTACATTCTATGATGTTGGAAAATCTGAAAGGAATGAATGAA
TATGTAGGTGCATATAATCTACTCATATTAAATCTGGATGAGATTAACAG
TTTTTTTTTTCTCCCCCCCACAAACAATGAGATTCAAGCAACAAATAAAA
ACAAAACAACAACAACAACAGAAAAACCTCAACTAAACAAACAACATTTT
CAATTAATAAAGTCCAGACTTTGGTAAGGCCTGTTGCTGAAGATACTACA
TACTTGTCACAAGACATAGAAATAGCATTGGTTCTGACCAGGAACCTTCC
TCCCTGTTGGCTAACTTTCACAGTGGCAGGAGGTGCTGCGTAGGATGCTA
GGGGAGAGCTTTCATCAGCAGTCTTACCCAGCTGGGAACCCTGTGCACGA
CTGGTATGGGAAGAGATACCCGTGGGTAGAATAGTGGCATAAATAGTATA
GGGGTAACCACAGCGGCTCCCTGAGATTATCTGTGGATAATGCAGAAATT
TACAGCTGTATCCCGGGGCAAAAAAATTGTCCGTGGAAAGAAAAAATGGG
AATTTTTGTTTCCAATTTTTCTAACCAAGGAACATTGTGGAAAAAAAAAA
AAGGGAAATTGTATAAACCCAATGTTTAATAAAAATGGGTGTGAAAAGGT
ATCTTTTTTTTTTTGTTAAAAGTAATGTTTTTTTTTCTATCGTGAAAAAA
ATATTTTTTCTTTTTCTTTCGTAAAAAATTTAATTTTTTATTTTGTTATT
TTGGGGTGTAGTCCTTCTCCCTACTCTAAATATATTATAATCTTTTGTTT
ATTTTGAACAAAAAAAATATTTTATTTTATATATTTTNTTTCTTGTTGAG
TTCTATATTTATTCTCATTTATGTGCATTTTTTAGATATTATATTTTTTT
TATTTATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a16.b1 MSMg01no064_a16.b1 CHROMAT_FILE:
MSMg01no064_a16.b1 PHD_FILE: MSMg01no064_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:40 2005
         (424 letters)



>mm_chr2_125860227_125861050
          Length = 824

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcattagtctatgcttttacatttgtgctttataattattttcccttaaactacc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaattcattagtctatgcttttacatttgtgctttataattattttcccttaaactacc 565

                                                                       
Query: 76  cagatttttcaagttaagtgtcaggaccgccctggagaacctcaagagtctccttccatc 135
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 564 cagatttttcaagttaagtgtcaggattgccctggagaacctcaagagtctccttccatc 505

                                                                       
Query: 136 cgtccgtactacagcacaatttctgtagatattttcacagctcaaaagtctttcccccct 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtccgtactacagcacaatttctgtagatattttcacagctcaaaagtctttcccccct 445

                                                                       
Query: 196 gaccccaccccaggacaataaccacagaaagagaaaatctttcagaaaagagcattgttt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaccccaccccaggacaataaccacagaaagagaaaatctttcagaaaagagcattgttt 385

                                                                       
Query: 256 taaagacaaataacagtaacttacttgttctgtttggaacagctgggtacacaagagttc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaagacaaataacagtaacttacttgttctgtttggaacagctgggtacacaagagttc 325

                                                                       
Query: 316 cgtgtctgctgtctgcctcgtgcaacttgagcctctctactgtagctacaaactatttct 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtgtctgctgtctgcctcgtgcaacttgagcctctctactgtagctacaaactatttct 265

                                                            
Query: 376 cagctgagaaatcccccagcagaatcataattgtttccataaatcaaca 424
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagctgagaaatcccccagcagaatcataattgtttccataaatcaaca 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)