BAC Information

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BAC

Clone NameMSMg01-064C10
Chromosome2 (Build37)
Map Location 93,900,354 - 93,900,763
singlet/doubletsinglet
Overlap geneHsd17b12
Upstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064C10.T7 (MSMg01no064_c10.b1)MSMg01-064C10.TJ (MSMg01no064_c10.g1)
ACCAG289706AG289707
length1,2531,273
length of high quality
(start - end)
427 (28 - 454)96 (186 - 281)
definitionCHROMAT_FILE: MSMg01no064_c10.b1 PHD_FILE: MSMg01no064_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:51 2005CHROMAT_FILE: MSMg01no064_c10.g1 PHD_FILE: MSMg01no064_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCTATGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCC
TTAGGTCAGAAGTTACAGATCTGTGGCTGGATAAGGACTACCAGCTGGTG
TTGGTCAGTTCTGGTTTTAAAAGATGACCGTTTCACATTCAGATTTATAG
CTTCTCTTGGGAAAAATCTGAAAATCATGTGATACAGACCTAAGGAACTG
AAAAGCAGCTGAGTATGTGAGCCTGGGCTCTCTAGCCCCTGCTGCTCTCT
GCTGTTTGAGCAGTGCTTCTAGATATCTGAGTGTGAGTTCCTCACCAGGT
GATTCCAAGTCTTTGGTCTACTTGAACTTAGTGAGCTTGAAAGATTGGAT
TGGTTTGGACCAAGTCAGCCTCCTGTGTCTCAGTCCATTTGCAGCTAATG
TGACAAGTACCTCGGACTGTCGGATATAAAGAACCAACAAGCATCTCTCT
CTTTGTGCCCCCCCCAAGAGTTCAGGATCCAGGGGGCTAGAAAAATAGCT
GGTGCCTGGTGTCTGCAGTGTTTCTTCACATGGTGAAGGGGAATGAACAG
CTTTATCAGATCCCTGTCCTTGTGGGGTCAGTGATCATCTCCCAACGTCT
CCACCTTTAGTGTGCTATTGGGGTTTCCACCTATGAGCTTTATGGGGCAC
AAGCATTCAGATCATCTTCCCATTCCCGGTATTCTCTGAAATCCACATAG
AACCTTGAGAGATGGCTCTCTTTTTTAGATGAGTGCTGTCAAAACAATAT
TGCTTGATCTGCCTGCTACCCCTCAAGCACTTATTTGCATACTTTTTAAA
AGCCAAGTTTTCTCCTTCTGTATCACCGTGCCTTCATTTGTAGGGGTTAG
CAAAAGTGCTTAATGCTGGGCCCTGCCCACGGTGTGAATGTTTGGATGAA
TTTTCAACGGGAATAAATACCAAATCCATCATTTTTCTCTTTCTTGATTG
GAAATCCCCTGTCTGTTTGAACCTTTACCTTCTATGCTGACCCTCTTCTT
TATTTCTAAAATCTTACAATTTAAATTTTTTCCTCCCTTTTCTTTTTGTT
TTATTTATACAATTTGCTTTCTAGGTATTCTTCCATTTTTATTCTTCCAA
CTATATTTTATTCCCTCCTTATCAACTTACTTCTCTTATTTGTTGCTTTC
TACTCCCTCTTCTTACTCTTCTTGATTTCCTTTTATCTTAAATTTATTCT
TTATCTATTTCTCTATTTCTCTATCTCTCTAACTCCCTTTATTATCTTGC
CTC
NNGGTTGAGAGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCAGGGGCCACTCCTCCTTTTGTCATTTCT
GATCCTAGGATATCCATCTAAAATCCCCCCGGTTCCTTTGGCCCGAGATT
CCATTCCCTTTCATCCTTGAGAACAAAAGAGGGTTTGAAAGCTTCTACTT
GATTCTTTCTATTCAGCCTTCTTATTATGAAAATTGTCCACATATACAGA
AAAAAACAAACTGAAAGAACACCCACACGCTGTATTCATTGGTTCCAGCA
ACTACCTGAACTCAGGGTCAGCCAGCGCTGTTCTCCACCCCCACTGCTGC
ATCCCCTCAAGATGAACTGCTCAGCAAACACCAAGCAGCCTTCCACTTCA
CTTGCAAAGGCTCTCTCTTTAAAAACAAGGACTCTGTCTTTAAACAGATT
TTTTTTGCCCCCCCCCAAAGAAGAAACACCCGCATTAAAAAAAAAGGGGG
TCACTAATCTCACCAGCATCCACGTTTCCCCAGGGCCGTTGCTTTTCTTG
GGACTTACTCGATTAAAGTGGGAAGGCTTTCTATACTGTTGCTGGCTAAT
CTATTGCTTACGTTTCTGTAGATTTTTCTCTTCCATTTCCCCCCTTTGCA
TTTGTCGCTGTCATTTATTGAAGCACCAGTCAGGGTTGTGCTGACTGTAC
CCTGCTTGAGGTTTCATGTGTTCTTTTATTTCTGTGTTGACAGATTCCAA
TCTGTTTAAATTCAAACCTGAATCTTTGACAAGACTATTGCCAAAGGTGA
ACGGGTCTTTTTCTATTGTAAATTGTGTTCCCTCTGTAATTGAACTTATA
TTGATGGCTTCGGCTAACACTTTCTTTATATGTTGTATATATTTCTCATG
TGTGAATACCCTCTATGTTGTGTTTTCCACTCTCTGAATTGCTAATTTGC
CTATTTTATATTCCTTTCCTTTTTCCTTTTATCTTTTATTTATTATTTTT
TTTTCTTTAAACTCTACATCCCTTTATCTCTCTATTAATTGCATATCTAT
TTTACCTTAATTTTTTTTTTCTTTTTACTCTAATTTTTATATTGATAAAT
ATCTAACCTTATTTCACTTTTCTTATTTAATCTTCTTTACGTTTCTCTGT
TCTCATTCTGTCTATCTCTTTTACAAATATTTCTATCTCTTTATTTTTCT
TATTAAATTATTATTTTTATATTTCACTATATACTTGTTGTGTCGCTATA
TTTATCTATCTTTGTTTGCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_c10.b1 MSMg01no064_c10.b1 CHROMAT_FILE:
MSMg01no064_c10.b1 PHD_FILE: MSMg01no064_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:51 2005
         (427 letters)



>mm_chr2_93900138_93900966
          Length = 829

 Score =  750 bits (388), Expect = 0.0
 Identities = 404/410 (98%), Gaps = 2/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattccttaggtcagaagttacagatctgtggctggataaggactaccagctggtgttg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 626 gaattccttaggtcagaagttacagatctgtggctggataaggactaccagcttgtgttg 567

                                                                       
Query: 77  gtcagttctggttttaaaagatgaccgtttcacattcagatttatagcttctcttgggaa 136
           |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 566 gtcagttctgtttttaaaagatgaaagtttcacattcagatttatagcttctcttgggaa 507

                                                                       
Query: 137 aaatctgaaaatcatgtgatacagacctaaggaactgaaaagcagctgagtatgtgagcc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaatctgaaaatcatgtgatacagacctaaggaactgaaaagcagctgagtatgtgagcc 447

                                                                       
Query: 197 tgggctctctagcccctgctgctctctgctgtttgagcagtgcttctagatatctgagtg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgggctctctagcccctgctgctctctgctgtttgagcagtgcttctagatatctgagtg 387

                                                                       
Query: 257 tgagttcctcaccaggtgattccaagtctttggtctacttgaacttagtgagcttgaaag 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgagttcctcaccaggtgattccaagtctttggtctacttgaacttagtgagcttgaaag 327

                                                                       
Query: 317 attggattggtttggaccaagtcagcctcctgtgtctcagtccatttgcagctaatgtga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attggattggtttggaccaagtcagcctcctgtgtctcagtccatttgcagctaatgtga 267

                                                             
Query: 377 c--aagtacctcggactgtcggatataaagaaccaacaagcatctctctc 424
           |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaaagtacctcggactgtcggatataaagaaccaacaagcatctctctc 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 829
Length adjustment: 9
Effective length of query: 418
Effective length of database: 820
Effective search space:   342760
Effective search space used:   342760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)