BAC Information

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BAC

Clone NameMSMg01-064C13
Chromosome2 (Build37)
Map Location 163,780,152 - 163,780,800
singlet/doubletsinglet
Overlap genenone
Upstream geneL3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
Downstream geneYwhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064C13.T7 (MSMg01no064_c13.b1)MSMg01-064C13.TJ (MSMg01no064_c13.g1)
ACCAG289712AG289713
length1,2461,427
length of high quality
(start - end)
654 (127 - 780)203 (69 - 271)
definitionCHROMAT_FILE: MSMg01no064_c13.b1 PHD_FILE: MSMg01no064_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:52 2005CHROMAT_FILE: MSMg01no064_c13.g1 PHD_FILE: MSMg01no064_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTATTTTTTNNNAACACTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCTTCTCCCTGTGTTCGACCCTTAAATGCCATCTGACAGCTC
TCAGCTGAGCCTGTGGCCCTTTAAAACACACACCACCTACCTCCTGAGTA
TCATTTGGCTTTTTCCTTGGTTCTGCCTTCAAGCTGAGGAGGTGATTCCT
GTCTGCGCAACAATTTTATTTCTTGTTATCAACAAACACATTGACATTCC
AATTTTTCACCAGCGTCCCAGGAGCTCAGCTTATGTATTTTTACCTCTGA
GAGACGACAGCAGCTGTCCTGCTGTGCAGCAGGCTGGTCACAAAAGTGTA
AGCTGCAAGGAGATTTGATAAGGAGACTCGTAAAAGAGACAGGAAGCGAC
CTGAAGAATGTTAATACATGGAGAATTTTCAACGATGAAATTTCACCCTC
TCCAAGCTAGAGATGAGAAGGCTACAGAACATGTAAACATTTCTGCAACT
CTAAGAGATCACTGTACTAGGTTGCAAACTAGTTGAATGGGGTAAAAGCC
ACAAATTATATTAAAAATACACATGCCTATGAAAAGCATACCTGTGAGGG
CTACAGACTAGGAGGGGGCATGAGAGATCTCTTGTGTACTGGAATATTCC
GGATCTTCATCTGTTAGTGGCTTCACACACAAATGCTTACATAGTGTTTC
ATCTGTCCTTGTAAGATACGGCACTGTCCTGTATATGAGCTATTTCTTAA
GTTTAAGAAACAAAACTGAACATTATGTGAATGAAATCAAAACCACAATG
AGATATCATCACCTTGGATGGATAAAAAGTGGTTGAGGAGACCGCCGGCC
GGCGAAGGACTTGCTAGGAAGCATGATGACCTGAGTTCAGACTCCCGGCT
CCCAATTAAATCCTGTCATGAACGCACACGTGTAACCCCAGCTCTGGTCG
GGGAAAGAAAAAGTAAACCCCCCCAGTTTTCCCGCCCCCAGAAAATCAAG
CTGATTCCGGGAACTTCCCGCTTCATGGAGGAAACCCGGACTCCAAAACT
ATCTCTGTAAACGGTCTAAGGAAAAGACCCCCCTTGTCTACCTGGGGGCT
CCCCACTCCCTTGTGAAACCATTTTGGCCTAATTTGGGTTATATTTACCC
ACTTATAACAAAACACCCTCACAAATTATCCTTTTTCCCCCTCCATTTTG
TTTTTTAATATCCACTATCACCTTATGGGTTTAAATACCCCCCTAT
NNAAACCATGGAGCAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGCCAGCCTTGGCTACAGGATGAGGCTGTG
CCTAAAAGGGAGGGAAGGAACCCACAGCGATGAGGCACACACCCTGCACC
CGGGAGGCAGAAGCAGGGCCTCTGAGTTTGAGGTCAGCCTGGTTTACAGA
GGCCAGAGAGGGCTACACAGTAAGAACTTGTCTTTTGAAAGTTAAAGGGT
TTTTTTGGGGGGGGGGGCGGTGTGCATTCCTAATCCTCGCTTATATTTAT
ATCTAAATTTCCACATTCTTGGTTCTTTGTTTTTCACATCTTTTTCTCTC
ATTAATGCTGCTGTATATCTCTTGTTTGTTTTGTTTACTTCTCTCTTGAT
CCTTTTTTTTTTTCTCCTGTCTCTTGTCATTTTATTTTTTTTTATTTATA
TAAGAATCCTTTTTTTTTTTTCCCCCCCCCCCCCAAAAAAAAGTTNCTTT
CTCCCAAAAAAAAAAGGGGGGGTTNNTNTCTCCTTTTTTNTTTTGTTCTT
CTTCTTTCTCGCGCTCTTCCTTCCTCTCCTTGTTTTTTCTTCTTTTTGTG
TCTTTTCTTTTGTTTTTCTTTTTCTTCTTTTTTTGTTTCTTTTTTTCTTT
CTCTTTTGTCGTCCCACCTCCCTTGCTTTTGGTGTTTTTTTCTTTTTCCC
CTTTTTTTCTTTTCCGCTTTCTCCCTTCTTCTCGTTCTTCTTCTTTATTT
TTCTCTCTTCTCTTTCTCTCCTTTTTATTTCTTTCTCTTTCTACTTTTTA
CTTATTTCTCTCTCTTTCTTCTCCATTTTTCCCCTTTTCCTTTTCCTCTT
TCTTCTTCTTAGCTTCTCTTTCTTCTTCCTTCTTTTTATCTTCTTACTTC
TTCTCATCTTCTCTCTCATACTTTTTCCTTTTTTTTTTCCTTGTCTTATC
TTCTATTCCCCCTTCTCTTTCTATTCTCAATCTCCTTCTTCTTTCCTTTC
TCTTATTTTTCGTTCTTTTCTCTTTCTTTCGTCTTTTCTCTTCTTTTTTA
TTTCCTTCTTCTTCTTTCCTTTTTCTCTTTTTCTTTTAATATTTCTCTCT
TTTTCTCCTTCTTTCCTTTTTTTTTTCTCCTATTCTTTCTATCCTTCTTC
TTCTCTTCTTCTTCATCCTCTTATCTTATCTTCCTCCTTCTCTTTTTACT
TCTTTTTCCTCCTTCTTATCATCTATTCTCCTACTTCTATTTTTCTCTAC
TTTCTCTTATAATTTTCTTTATTCTATTTCTTTCCTCTAGTTTCTTACCT
TTTTATTTTCCTTTCTTCATTCTTCTTCTTTCTTTTCTCTTCTCTTTCTT
CTCTTTATTTTTCTATCTCTTTCCTCTTTTTTCTTCTTCTTTTTCGTCTC
TTCCTTCTTACTCCACTCCTTTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_c13.b1 MSMg01no064_c13.b1 CHROMAT_FILE:
MSMg01no064_c13.b1 PHD_FILE: MSMg01no064_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:52 2005
         (654 letters)



>mm_chr2_163779948_163781000
          Length = 1053

 Score = 1172 bits (606), Expect = 0.0
 Identities = 639/650 (98%), Gaps = 1/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   caccacctacctcctgagtatcatttggctttttccttggttctgccttcaagctgagga 64
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caccagctacctcccgagtatcatttggctttttccttggttctgccttcaagctgagga 264

                                                                       
Query: 65  ggtgattcctgtctgcgcaacaattttatttcttgttatcaacaaacacattgacattcc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcgattcctgtctgcgcaacaattttatttcttgttatcaacaaacacattgacattcc 324

                                                                       
Query: 125 aatttttcaccagcgtcccaggagctcagcttatgtatttttacctctgagagacgacag 184
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 325 aatttttcaccagcgtcccaggagctcagcttatgtattttcgcctctgagagacgacag 384

                                                                       
Query: 185 cagctgtcctgctgtgcagcaggctggtcacaaaagtgtaagctgcaaggagatttgata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagctgtcctgctgtgcagcaggctggtcacaaaagtgtaagctgcaaggagatttgata 444

                                                                       
Query: 245 aggagactcgtaaaagagacaggaagcgacctgaagaatgttaatacatggagaattttc 304
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 445 aggagactcgtaaaagagacaggaagcgacctgaagaatgtcaatacatggaga-ttttc 503

                                                                       
Query: 305 aacgatgaaatttcaccctctccaagctagagatgagaaggctacagaacatgtaaacat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 aacgatgaaatttcaccctctccaagctagagatgagaaggctacagaacatgtaaccat 563

                                                                       
Query: 365 ttctgcaactctaagagatcactgtactaggttgcaaactagttgaatggggtaaaagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttctgcaactctaagagatcactgtactaggttgcaaactagttgaatggggtaaaagcc 623

                                                                       
Query: 425 acaaattatattaaaaatacacatgcctatgaaaagcatacctgtgagggctacagacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaaattatattaaaaatacacatgcctatgaaaagcatacctgtgagggctacagacta 683

                                                                       
Query: 485 ggagggggcatgagagatctcttgtgtactggaatattccggatcttcatctgttagtgg 544
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 684 ggagggggcatgagagatctctcgtgtactggaatgttccggatcttcatctgttagtgg 743

                                                                       
Query: 545 cttcacacacaaatgcttacatagtgtttcatctgtccttgtaagatacggcactgtcct 604
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttcacacacaaatgcttacatagtgtttcatctgtccttgtaagatacggcactgtcct 803

                                                             
Query: 605 gtatatgagctatttcttaagtttaagaaacaaaactgaacattatgtga 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtatatgagctatttcttaagtttaagaaacaaaactgaacattatgtga 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space:   671692
Effective search space used:   671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)