BAC Information

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BAC

Clone NameMSMg01-064D06
Chromosome2 (Build37)
Map Location 104,505,736 - 104,506,033
singlet/doubletsinglet
Overlap genenone
Upstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3
Downstream geneTcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D06.T7 (MSMg01no064_d06.b1)MSMg01-064D06.TJ (MSMg01no064_d06.g1)
ACCAG289745AG289746
length795755
length of high quality
(start - end)
306 (45 - 350)---
definitionCHROMAT_FILE: MSMg01no064_d06.b1 PHD_FILE: MSMg01no064_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:57 2005CHROMAT_FILE: MSMg01no064_d06.g1 PHD_FILE: MSMg01no064_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGGGTCTGCCTGTTTGCCCCTAATGCCGAGGTTGCAGGCAAGCA
AAGTCAGGCCTAACTTTTTATGTAACTGCTGGGATTCAGTCTCAGCTCCT
CAGGCCCTCTTATTCATTGGGTATGTCTCCAACATCTCTTCTTCAGATTG
TATGATCATTGCTACAGACATTATATTACTCATCTACTACCATTTACAGT
ACATGTTAACAACATGAGGAGTCCTAGTCTGTGTACACTCCGTTATATGC
ACTTTCCTGTTTTGCTTTGGGAGTGTTTGGTTTTTGTTTTTTGTTTTTTT
GCTTGTTTGTTTGTTCCCCCCCCCCCCCCCCCNTCGTGTATTTTAAAANA
TGGTGTGGGTCCGACCCCCCAGCAAAAAAAAAAAATTACCTCTCTGGGGG
GGGGTTACCTTTACCATATCACTCTTACCCACTTCTATTTCCTCCCCTAT
ATTTCATTTTGTAGTCACCCCGCCCTACTAAAATATATATATTTCCCCCA
TACAATCTTTACCTCGCTTGCGTGTAATTTACTATATAGCCCATACCCCC
TTATGCACTATACCCCTTTTACATTCCCACACTTTTTTTGTCCTTAATTA
CGCTCCAATACCCCTTTCTCTCACCCTATATCTCACCCTATATCACCATC
CCCTCCCTTTTGCCTCCTCCCCGCTTCTCGCCCCGTCCATGTCCACGTCC
CCGTTTGCCTACATACACTAACCCCGCTTTGCCCCTCCTCCCCCC
ACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCACCAGTTGAACACCTCTCA
TACACTGAAACACTGAATTCCGGTAGCACAGGCCACATGCCCCTGAAAAC
TGGCTTGAAACTGTGAACAGAAACACTGTCCCACCGCCTTCTGATGGAAT
TTCATCTTCTTTAAACCGGAACATATTCAAACATCTTTGCTTAAATCCCC
ACTAGTCCACTGCTAGGAACCGTAAGGAGGAAGGAATCCAATACCAACCA
TATAATGCCATTTTTAACCAATCAATTCTAACTTCTGCATTTCCTCCAAA
CCCCCACCCCGGATTTTTAATGATTCCCCCCCCCCTCCCCCCGTTTCTTT
TCTGGTTCTCCTTATCTCCTTCCCCCACAAAATAAAAAAAAAACAATGGG
GCTTGCTCACCCTTGATCCTCCCCCCTCCTGGCCCCCCCCCTTTATCTCA
AACTTTTCACGGACTAGCGGCTCCTAAGTCATACAAAACCTGGCTACCAC
CTAATTAAAACAAACCCACCTTTCGTCCCCGCATAACACGTTCCATCCGA
TCAAAACCCATGACTTGTCCCTTTACACGTATCCGCATTCCAATCCCTCC
CAAACCACCCTGGTTTCCCTCTACTCCCTCCCCTATTTGCCCCTTTGATT
TTCCCTTTCCCTGTCCCTTCCCTTACCCTCCCCTCTTCCCCCTTTATTTC
TTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d06.b1 MSMg01no064_d06.b1 CHROMAT_FILE:
MSMg01no064_d06.b1 PHD_FILE: MSMg01no064_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:57 2005
         (306 letters)



>mm_chr2_104505532_104506237
          Length = 706

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%), Gaps = 2/299 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagggtctgcctgtttgcccctaatgccgaggttgcaggcaagcaaagtcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagggtctgcctgtttgcccctaatgccgaggttgcaggcaagcaaagtcagg 264

                                                                       
Query: 65  cctaactttttatgtaactgctgggattcagtctcagctcctcaggccctcttattcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctaactttttatgtaactgctgggattcagtctcagctcctcaggccctcttattcatt 324

                                                                       
Query: 125 gggtatgtctccaacatctcttcttcagattgtatgatcattgctacagacattatatta 184
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtatgtctctgacatctcttcttcagattgtatgatcattgctacagacattatatta 384

                                                                       
Query: 185 ctcatctactaccatttacagtacatgttaacaacatgaggagtcctagtctgtgtacac 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcatctactaccattt-cagtacatgttaacaacatgaggagtcctagtctgtgtacac 443

                                                                      
Query: 245 tccgttatatgcactttcctgttttgctttgggagtgtttggtttttgtttttt-gttt 302
           || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 444 tctgttatatgcactttcctgttttgctttgggagtgtttgttttttgtttttttgttt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)