BAC Information

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BAC

Clone NameMSMg01-064G12
Chromosome2 (Build37)
Map Location 163,780,075 - 163,780,479
singlet/doubletsinglet
Overlap genenone
Upstream geneL3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
Downstream geneYwhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064G12.T7 (MSMg01no064_g12.b1)MSMg01-064G12.TJ (MSMg01no064_g12.g1)
ACCAG289888AG289889
length1,2571,315
length of high quality
(start - end)
424 (30 - 453)---
definitionCHROMAT_FILE: MSMg01no064_g12.b1 PHD_FILE: MSMg01no064_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:18 2005CHROMAT_FILE: MSMg01no064_g12.g1 PHD_FILE: MSMg01no064_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCATTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTCTCCCTGTGTTCAGAACGATGTTTGGTATCTGACAGCTCTCAGCTGA
GCCTGTGGAACAGACGCACACACACCCCCCACCTCCTGAGTATCATTTGG
CTTTTTCCTTGGTTCTGCCTTCAAGCTGAGGAGGTGATTCCTGTCTGCGC
AACAATTTTATTTCTTGTTATCAACAAACACATTGACATTCCAATTTTTC
ACCAGCGTCCCAGGAGCTCAGCTTATGTATTTTTACCTCTGAGAGACGAC
AGCAGCTGTCCTGCTGTGCAGCAGGCTGGTCACAAAAGTGTAAGCTGCAA
GGAGATTTGATAAGGAGACTCGTAAAAGAGACAGGAAGCGACCTGAAGAA
TGTCAATACATGGAGAATTTTCAACGATGAAATTTCACCCTCTCCAAGCT
ATTTTTTTTCCCCCCCCCCAACATGTAAACATTTCTGCAAAAAAAAGAGA
TCACTGTACTAGGTTGCAAACTAGTTGAATGGGGTAAAAGCCACAAATTA
TATTAAAAATACACATGCCTATGAAAAGCATACCTGTGAGGGCTACAGAC
TAGGAGGGTACATGAGAGATCTCTTGTGTACTGGAATATTCCGGATCTTC
ATCTGTTAGTGGCTTCACACACAAATGCTTACATAGTGTTTCATCTGTCC
TTGTAAGATACGGCACTGTCCTGTATATGAGCTATTTCTTAAGTTTAAGA
AACAAAACTGAACATTATGTGAATGAAATCAAAACCACAATGAGATATCA
TCACCTTGGATGGATAAAAAGTGGGTGAGGAGACCGCCGGCCGCCGAAGG
ACTTGCTAAGAAAGTATGATGACCTGAATTCAGACTTCCGGTCTCCACAT
AAATTCCTGGCATGAAATCACACGTGGAACCCCCGCTTTTGGCAGGGAAA
AAAAAAAGGTATCCCCCTTAGTTTTTCAGCCCTCAAAAATTCAACTTGAT
TCGGGAATTCCCTGTTTCTTGGAGGAATCCGTTATTCTAAAATAATATTG
GATAACGTTACAGGAAAAACCCTCTTTTTTTATTGGTTCCTCCTACCTCT
GTTTAAACATTTTTTCTTTTGTTTTTTTCTTATCCTTTTTTAATAACTAC
TCTTAATTATTATTTCCACCCAGTAATTTCTTTTTATTTTACAGTCCTTC
TTGTATTTTCCCTTCACCTATAATTTTCTAATTATATTTCTGGTTTGCTG
GGCATGT
NNAAGAGGGAGCTGGGGCGCTGGGCGTGAAXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTTTAAGGGGCCNGNGNANNGGANGAGGNGGGGNNNACCCGT
TTAAAAAGGAANNNAGAGGGAGGAGGNANANANNNGGGANNNGGGAGGNA
GAAGNAGGGNNNNGGAGNTTTCTTAAGAAGGGNNNANAGAGGNNAGAGAG
GGNNANANAGNAAGAANNGGGNNNNGGAAAGNNAAAGGGNNNNNNGGGGG
GGGGGGGNGGNNNNNNNNNNNNNNNNNNGGGGGAGGGNNNGGGGGGGGGN
GNGNNGGNNNNNGGGGGATTGGGGNGGGGGNGGGGGGGGGGGGGGNGGGG
GGGGGGGGGGGGGAGGGGAANGAGGGNGNAAAAGGAGAAAGATTTTTTTT
TTTGANAAGGGAGAAGGGAGGGGGAGGGGGGGGGGAAAAAAAAAAGNGTT
TTTTTTTTTTTCCCCCCCCCCCAAAAAAAANNNNCCCCCCAAAAAAAAAA
AAAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNTTTTTTTTTNNN
NNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNTTNTNNTNNN
NNNNNNNNNNNNNNCNNTNNNCNNNNNNTNCTNNNTTCTTNTTTTTTNNN
NNTNNNNTTTTCTTTTCNNTTCTTCTTCTTTTTNCTTTTCTTTTTTCCTT
TTTTCCTTCTCNTTTTTTTTTCCTNNTNTCNTTTTTNNCTTTTTTTTTTT
CCTNTTTCTTCCTTTCTTTTTCTTTTNTTTCTTTTCTTTTTTTCTTNTTT
TNNTTTTCTTTTTTTTCCTTTTTCTTTNCTTCTCTTCTTTNCCTTTTTTT
CTCTCCNCTTTTTTTTTCTTTCCTCTTTCTTCNCTTTTTTTTTTNCTTTT
TTCTTCTNTTTTTTTNTTTTTTTCNCTTTCCTCCCCTTTTCCTCNNTTTT
TCTTTTTTTTTTNCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_g12.b1 MSMg01no064_g12.b1 CHROMAT_FILE:
MSMg01no064_g12.b1 PHD_FILE: MSMg01no064_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:18 2005
         (424 letters)



>mm_chr2_163779859_163780681
          Length = 823

 Score =  700 bits (362), Expect = 0.0
 Identities = 395/406 (97%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcttctccctgtgttcagaacgatgtttggtatctgacagctctcagctgagcctg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 217 gaattcttctccctgtgttcagaacgatgtttggtatctgacagctctcggctgagcctg 276

                                                                       
Query: 77  tggaacagacgcacacacaccccccacctcctgagtatcatttggctttttccttggttc 136
           |||||||||||||| | ||||  | |||||| ||||||||||||||||||||||||||||
Sbjct: 277 tggaacagacgcacgcgcaccagctacctcccgagtatcatttggctttttccttggttc 336

                                                                       
Query: 137 tgccttcaagctgaggaggtgattcctgtctgcgcaacaattttatttcttgttatcaac 196
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgccttcaagctgaggaggcgattcctgtctgcgcaacaattttatttcttgttatcaac 396

                                                                       
Query: 197 aaacacattgacattccaatttttcaccagcgtcccaggagctcagcttatgtattttta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 397 aaacacattgacattccaatttttcaccagcgtcccaggagctcagcttatgtattttcg 456

                                                                       
Query: 257 cctctgagagacgacagcagctgtcctgctgtgcagcaggctggtcacaaaagtgtaagc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctctgagagacgacagcagctgtcctgctgtgcagcaggctggtcacaaaagtgtaagc 516

                                                                       
Query: 317 tgcaaggagatttgataaggagactcgtaaaagagacaggaagcgacctgaagaatgtca 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgcaaggagatttgataaggagactcgtaaaagagacaggaagcgacctgaagaatgtca 576

                                                         
Query: 377 atacatggagaattttcaacgatgaaatttcaccctctccaagcta 422
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 577 atacatggaga-ttttcaacgatgaaatttcaccctctccaagcta 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space:   337810
Effective search space used:   337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)