BAC Information

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BAC

Clone NameMSMg01-064H07
Chromosome2 (Build37)
Map Location 44,122,234 - 44,195,666
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064H07.T7 (MSMg01no064_h07.b1)MSMg01-064H07.TJ (MSMg01no064_h07.g1)
ACCAG289923AG289924
length1,312730
length of high quality
(start - end)
426 (29 - 454)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no064_h07.b1 PHD_FILE: MSMg01no064_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:24 2005CHROMAT_FILE: MSMg01no064_h07.g1 PHD_FILE: MSMg01no064_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,122,234 - 44,122,641)(44,195,383 - 44,195,666)
sequence
NNNGGACAGTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CAGATGAACTTTAGAGAAGGTGACTGTGGGTGGTTCAGTAATAGAATGCT
TGTCTAGCATGCACAGGTCCTGAATTCGACCCTTAACATTGCAAAAACAA
CAACAAACAATAAAATTAAACCCCACAGAAAACTAAACCATGGCCAATTC
ATATAATACAATTGTTAAATTATTCTTTTGAAACATTACATCACAAGGCA
AAAAGGCACTAGTTATTAAGCGAAAGCATAAGCTTAATGTAGCATTACAG
TACCATCTTAGCCTGTTCTTTGCTACTGTGGCAAACTAGGGCTGGGTAAT
AGGTAAAGAATCGGAGCTGTAAGTTTTGAAGACTGGGAAAGTCAAAGTCT
TTCCTCAAGAAGGGCATCCAGCTGTAGACCTAAGGTCACATGTGGAAAGA
CATTTTTTTATCCCCCCCCCCTGGAAGAAAAGTGGATAGAAAAAAAGAGA
GAAAGAAGAAGGAAGAAGAAGGGAGAGACAGGTTTTTTAGCTGTGGTAGG
GGAAATGGCTCCCGTATCTAGGATAATGGCATTCTTTCATGAAGGGAGAG
CTCTCATGGCCTAATCTCCTCTTTAAAAGTTCTACTTCTCAACACTTGCA
CTGGGAATTTGGTGCCTAACACATGAGCTTGGAGTACATATATAAATCAT
AGCAAGTGTAGATCTGTTACTAAACATGCATATGAATATCTGCGAATGAA
TATTTAAGCCTGAAGTTTTTTCTTCTGTTTTTGCTTTAAAATGATCTGTG
CATTTCTTGAAGTAAGAAAACTATCTTTAATGAATATTTAATAATATTTT
TTGTTAAGCTAACCTATATTAGTAATTATTCTTTATATTCTAAACTTTCT
AAGAGCTTTCCAAAGAAACTCCGGATTCATAATCCTTTCAATAGAAAACA
GAATTCCTGTTAGTTGTTCCCCCTTGTCTTTGTAAAGGTGGTCCTCCCCC
CCCAATTAACAGAGCTTTCCCCTATTGTTTTTCCTGGCTAATTCCCGGGC
TAATCTATTAATACTAATCCCTAAATCTTCTTATAATGTTGTCTCTCTAA
AAACAAATTAATCATTTTTACTTTATTCCTTATAATAACTTTAAACTCTT
TCATAATCTTTTACCCTTCTATTATCTTCCTTCCATATATTAACTGTCTA
TTCTCTGCTCAATACATATATATAATATTAATCTCCTCTATTCTACTCAC
CTTCTCACTCTCTCCTCCTATACATTATCTTCTTAACTTCCTCTTCTACT
TTATTATCATAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAAATGTCAATTAAAAAAGACACA
AAGTGGGCGTTGGAGAGGAGGTACATCTTCTATTCTTGGCTAGGTATGTT
GCAAGAGAGGCTTTTAAGCGTGTTTGTAAGGGACAGCCTAAGAAAATGGC
TTAGCATAACATATTCGCTCATTTCCAGTAACTTTCCTTCACTTAGATGG
AGCATACAAAGTTCTGATTAAGCAAATGTTCTGGTTAAAAACACTTATCA
TCATATGCGGATTAGCAGTATTCAAATAGCACAATTAATACTAAAATTAC
AAGGACACATATTTTTCATCCCCCGCCCCTTCACAAGGAACTTTTGCATC
TTCAAGCTGTCATTACCCCCCAAAGTTATCTCTGTGGCGAGAGTGTGGTT
ATTAGATAAATGGATGACTATTAGAAGTTTCTGACTGGCGAAATGGCAGC
TAATTGAAATTTGTTTGGATCCTTTTGGGCTAGAGTTATTTATTGAATAA
TGCTATTGGATGATACTCCTTAAGCCTGGGTAATGCTGCTAACCCTGATT
TTGCTGGTCACTTTCTAATCCGCCTGTTTGCTACTTAGGGAATCTCGCTG
TGCTTGATTCTAGCCTGATACACCGAATCCCTTCCTTCTTGGTTGCACCT
GAAGCTTTCCGAGGCACGCCCTTTACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_h07.b1 MSMg01no064_h07.b1 CHROMAT_FILE:
MSMg01no064_h07.b1 PHD_FILE: MSMg01no064_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:24 2005
         (426 letters)



>mm_chr2_44122017_44122842
          Length = 826

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcagatgaactttagagaaggtgactgtgggtggttcagtaatagaatgcttgtct 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcagatgaactttagagaaggtgactgtgggtggttcagtaatagaatgcttgtct 277

                                                                       
Query: 78  agcatgcacaggtcctgaattcgacccttaacattgcaaaaacaacaacaaacaataaaa 137
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 agcatgcacaggtcctgaattcgatccttaacattgcaaaaacaacaacaaacaataaaa 337

                                                                       
Query: 138 ttaaaccccacagaaaactaaaccatggccaattcatataatacaattgttaaattattc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttaaaccccacagaaaactaaaccatggccaattcatataatacaattgttaaattattc 397

                                                                       
Query: 198 ttttgaaacattacatcacaaggcaaaaaggcactagttattaagcgaaagcataagctt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttttgaaacattacatcacaaggcaaaaaggcactagttattaagcgaaagcataagctt 457

                                                                       
Query: 258 aatgtagcattacagtaccatcttagcctgttctttgctactgtggcaaactagggctgg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aatgtagcattacagtaccatcttagcctgttctttgctactgtggcaaactagggctgg 517

                                                                       
Query: 318 gtaataggtaaagaatcggagctgtaagttttgaagactgggaaagtcaaagtctttcct 377
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtaacaggtaaagaatcagagctgtaagttttgaagactgggaaagtcaaagtctttcct 577

                                                           
Query: 378 caagaagggcatccagctgtagacctaaggtcacatgtggaaagacat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caagaagggcatccagctgtagacctaaggtcacatgtggaaagacat 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no064_h07.g1 MSMg01no064_h07.g1 CHROMAT_FILE:
MSMg01no064_h07.g1 PHD_FILE: MSMg01no064_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:24 2005
         (284 letters)



>mm_chr2_44195183_44195866
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatgtcaattaaaaaagacacaaagtgggcgttggagaggaggtacatcttctattc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 caaaatgtcaattaaaaaagacacaaagtgggtgttggagaggaggtacatcttctattc 425

                                                                       
Query: 61  ttggctaggtatgttgcaagagaggcttttaagcgtgtttgtaagggacagcctaagaaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 ttggctaggtatgttgcaagagaggcttttaagcgggtttgtaagggacagcctaagaaa 365

                                                                       
Query: 121 atggcttagcataacatattcgctcatttccagtaactttccttcacttagatggagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atggcttagcataacatattcgctcatttccagtaactttccttcacttagatggagcat 305

                                                                       
Query: 181 acaaagttctgattaagcaaatgttctggttaaaaacacttatcatcatatgcggattag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agaaagttctgattaagcaaatgttctggttaaaaacacttatcatcatatgcggattag 245

                                                       
Query: 241 cagtattcaaatagcacaattaatactaaaattacaaggacaca 284
           ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagtaatcaaatagcacaattaatactaaaattacaaggacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)