BAC Information

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BAC

Clone NameMSMg01-064J19
Chromosome2 (Build37)
Map Location 76,729,053 - 76,729,404
singlet/doubletsinglet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J19.T7 (MSMg01no064_j19.b1)MSMg01-064J19.TJ (MSMg01no064_j19.g1)
ACCAG290036AG290037
length1,174744
length of high quality
(start - end)
369 (27 - 395)87 (70 - 156)
definitionCHROMAT_FILE: MSMg01no064_j19.b1 PHD_FILE: MSMg01no064_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:40 2005CHROMAT_FILE: MSMg01no064_j19.g1 PHD_FILE: MSMg01no064_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCTATGGGCGCTAAGACTCCATAGGGAGAGGATCCGCGGAATTCAA
TTGCAATGTGCAGACATTATCTGAAAATGTTGTTTGGTACTTTGCTCCAC
TGACAATCTTAGTTTTCTCATGAACCCCGGCAATAGTGATGGGAGACGAT
CCAGCTACTTTACATTCTAAGATGCAAGAGGTGCCCAGGACACCACCAGT
ATCCTTCAGTCTTCGTGTGAAAGAGGGAGGGACCATTCGGTCTGCATGAG
GGAAGACATATGACTTGTGGTGACTTGAAAGGACAGAAGAGATATGAAAG
AAGGAAAGTTCATAAGAGAAATTTGTATTTGCGAGCAGATGCAAATGCCA
GAACTAACCTGACACATCGACCACAGCTGGGCAACTGCTTTTTCTTTTTT
TTTTCAGAACCAGGAAGGNGNAGGAGCCGGCANCAAAAAAAAAAACTTTT
TGGTCTTCTNCCGNCCCCAAAANGNNGCCCTCCCAAACCAGGGAGGGGGG
NNGNNGNNNNNGAGNNNNCCGNCCNNNNNCCNNNCNNCNGAGNGCNCCGG
AGGGCCNGCCCCCNNNCNCCCCGGGGCNCNCGGNNCCCCCNCGGGCNCCG
GCNGGGNCCCGGCCNNCNCNNCNNGGGCCGCNGGCNCGGNNNNNNNNCNC
GNCCGGCCNCCNGGNNNNCCNNGCCCNNNCNNNCCCGGCNNCNCCNCNNG
GNNNGGCCCNNNGNNCCNNNCCCCCGGCGGGGGNNNCCCCCNCCNCCCCC
GGGGCNNNNNNNGGGGGNCCCGGNCNCCCCNGGGCNCCCGNNNNCCNNNN
NGGCCNNCCNNNNCNGGCNGGGGNGGGGCCNCNNNCCCGNCCCCCGNCCN
NNCNGGGCCGGGCNCGGCCGCCNNNGCGGGGGNGNCGNGGGGGGGCCGCC
GGCGGCCGGCGGGGGGGGGCGCCCCCGGGCCCGGGGGGGGGGGCCCCGGC
GGGGGCGGGGGGGGGGNNCGCGGGGGGCGGGGCGGGGCCCCGGGCGGGCG
GGGGGGCCCGGGCGGCGGGGGGGCGGGGCCCGCNGCGCCGGGGCCNCCGC
GGGGGGCGCCCGCCGGCGGGGGGGGGCGCGGGGGCCCCCGCGCGGGGGCG
GGGGGCCGGGGGCGGCGCGCCGGGGGGGCGGGCGCGGGCGCCGCGCGCGG
GGGGCGGGGCGGGGGCGGCGCGCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTTAAAGCCCAAAGGGTTAGCTGTTATTT
TTACGTCTACAAAACTATCCCTATTATGCTTAAAACTAAGTATGCTGGTT
AGTTGTCAGCTTGACACAGACTAAAGTCATCTGGGAAGAGGGAACCTTGG
GGGAAAAATTATCTCCACCAAACTGGCCTACAGGCATGTCTTTGAAACAT
TTCCTTTGATTAAGGGTTGTTGCCGGAGGATCAAGGGGACCTCGGGCAGA
ACCATCCCTGGTTTTGTTATCCTAGGTTGCTCAACAAGGAAAGCCAGAAT
TAGGGTTTCCTCCCTGGACTATGCCCCATTTCTTGCTTGGAGTTCTGGGT
TGGGCCCCCCCCAAAAAAAAAAAAAAATCTCTAGGAGGGTGTGACCTCTT
TCCTCCAAAGGTGGCTTTTGGCCTTGTTTTATTGCACCACCAAAACTCCA
ATTAGAACCTTAAATAAGGAACTCCGGTTAGAATCCCTCTCGCCTCATTC
AAAGGGGCTCTGTGCATGTTTGTGTTACGCTCGCGCAAAGAAACCGGTCC
CCCCCTTTACCTGGTAACAGTTTAATCACTTGCCCTTATCACGTACCGCT
TATTTTGTTCCTGGGCTCCTAATTTTGTCCCCTTTGTCCCTTCCCGCGCC
TTCCTTTATGCCTCTTATACCCATCCTACCGCCTCCCTTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j19.b1 MSMg01no064_j19.b1 CHROMAT_FILE:
MSMg01no064_j19.b1 PHD_FILE: MSMg01no064_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:40 2005
         (369 letters)



>mm_chr2_76728837_76729605
          Length = 769

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcaattgcaatgtgcagacattatctgaaaatgttgtttggtactttgctccactg 76
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcaactgcaatgtgcagacattatctgaaaatgttgtttggtactttgctccactg 276

                                                                       
Query: 77  acaatcttagttttctcatgaaccccggcaatagtgatgggagacgatccagctacttta 136
           |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 277 acaatcttagttttctcatgaaaccaggcaatagagatgggagacgatccagctacttta 336

                                                                       
Query: 137 cattctaagatgcaagaggtgcccaggacaccaccagtatccttcagtcttcgtgtgaaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cattctaagatgcaagaggtgcccaggacaccaccagtatccttcagtcttcgtgtgaaa 396

                                                                       
Query: 197 gagggagggaccattcggtctgcatgagggaagacatatgacttgtggtgacttgaaagg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagggagggaccattcggtctgcatgagggaagacatatgacttgtggtgacttgaaagg 456

                                                                       
Query: 257 acagaagagatatgaaagaaggaaagttcataagagaaatttgtatttgcgagcagatgc 316
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 457 acagaagagatatgaaagaaggaaagttcataagagaaatttgcatatgcgagcagatgc 516

                                                               
Query: 317 aaatgccagaactaacctgacacatcgaccacagctgggcaactgctttttc 368
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 517 aaatgccagaactaacctgacacatcgaccacagctgtgcaactgctttttc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)