BAC Information

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BAC

Clone NameMSMg01-064L10
Chromosome2 (Build37)
Map Location 116,006,448 - 116,006,754
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L10.T7 (MSMg01no064_l10.b1)MSMg01-064L10.TJ (MSMg01no064_l10.g1)
ACCAG290108AG290109
length733734
length of high quality
(start - end)
310 (46 - 355)41 (198 - 238)
definitionCHROMAT_FILE: MSMg01no064_l10.b1 PHD_FILE: MSMg01no064_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:52 2005CHROMAT_FILE: MSMg01no064_l10.g1 PHD_FILE: MSMg01no064_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATGTAGAAGATTGAAAGGAGACTCTTATCTCTCTCCCTTTGC
AAAAACCAACTCAAAATGAACTGAAGACCTTAATGTGGAAACCCACTATA
GAAAACATGAAGATATTGGCATAGACAATAACTTCCTGACCAGGACTTCA
GTATTTGAGGAAATAATGGTAAGGCTTGACAGAAAGGACCACACTTAATG
GAGAGCCCTACCCAGAAGGAGCACACTGAACTGAGAGCCCTGCACAATTC
AGGGAATACTCAACAGGGCGGATGAGATTGCTTTAGGAGCAATCAGCAGA
TATGCTTTTTGATACACCACCCGACGTAAATTGATACCACTAGTATGAAA
AACACTAGAAGCTGTCTCAAAAACCAAATGATGCAACAATCAGATAATGA
GCTTCAGGTGATCCTCCAGTGCTGTTGGAAGCTTTAATTTGTTGGCACGG
AGGTTTGCTTTATGGATAGTGAAACAGGTAAACACGGAGGCATCTGACAT
TGGATTGGCACCTGTTCTGTTGACTCTCCTGAGACATCCCAGAACTCTAC
CCAGATCTGATATTCTTCCAAGGTGGATATTTGTCTAGCACCTCATGCTG
TGACTTCTTTCTATGGCACTTGTCCCTAGAAGAAATATCCCAAAATAAAA
TTTCTCATCATCATCCATGTGACTTGGTAATGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTAACTGGAAGGTTAAGGAC
TCAAAAAAGGCCAAAATTTATGGAGAAAAAAAAAAAAGCAATTTTCCAGA
ACCAATAATAAACCAACCAGGAGGTCCAAACATTTAAAAAAAAATTACCC
CCAAGGGGGGGGCAAAAGAAAGGGGAAAGGGGTGGCCGGAAAAAAAAAGG
TCCAAAAAAATTAAGGTAAAAAAAAAAAGGGCCCGGGGTTGGGCCTAAGG
GGAAACATTGGGTTTCCATCCGGGGCTATTCAAATTAACAGGCAGGGAAT
TCCCAGGAAGGAGTATGGTANTTTCCCCCCTCAACCCCACGGAGGGGAAA
TTTAAATTTCCAGGAAGGTACCACGGAAAAAAAAAAAGAGGAGGCTTGGG
AGGGTGGAAGGGCAAAGGAAACCTGGCCGGAAGGGGGGCTTGGCAATACC
GGCAAGGGGGCAAATTTGGATTACAAAAATCGGAAACGGAACCCCCCAAA
AAAGGAGGAGAAGGGCCAAAGGAAAGGCCCCTAAGGGACCCAAAGGCTAA
TAACCAAGCTAAAATGGGACAAAGGGCTTTTCTCCGGCTTTCGCGACCAG
GCACCTAGCTAGGTTCAGTCCCCGCCGGGGCGCCGTCACGAAGCAACGCG
CCCTGGCGGTGGCAAACTCCCCACCATAAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l10.b1 MSMg01no064_l10.b1 CHROMAT_FILE:
MSMg01no064_l10.b1 PHD_FILE: MSMg01no064_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:52 2005
         (310 letters)



>mm_chr2_116006245_116006954
          Length = 710

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacatgtagaagattgaaaggagactcttatctctctccctttgcaaaaacca 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccgcatgtagaagattgaaaggagactcttatctctctccctttgcaaaaacca 263

                                                                       
Query: 64  actcaaaatgaactgaagaccttaatgtggaaacccactatagaaaacatgaagatattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcaaaatgaactgaagaccttaatgtggaaacccactatagaaaacatgaagatattg 323

                                                                       
Query: 124 gcatagacaataacttcctgaccaggacttcagtatttgaggaaataatggtaaggcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatagacaataacttcctgaccaggacttcagtatttgaggaaataatggtaaggcttg 383

                                                                       
Query: 184 acagaaaggaccacacttaatggagagccctacccagaaggagcacactgaactgagagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagaaaggaccacacttaatggagagccctacccagaaggagcacactgaactgagagc 443

                                                                       
Query: 244 cctgcacaattcagggaatactcaacagggcggatgagattgctttaggagcaatcagca 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgcacaattcagggaatacgcaacagggcggatgagattgctttaggagcaatcagca 503

                  
Query: 304 gatatgc 310
           |||||||
Sbjct: 504 gatatgc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)