BAC Information

Click to search

BAC

Clone NameMSMg01-064L14
Chromosome2 (Build37)
Map Location 49,096,887 - 49,097,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L14.T7 (MSMg01no064_l14.b1)MSMg01-064L14.TJ (MSMg01no064_l14.g1)
ACCAG290115AG290116
length733726
length of high quality
(start - end)
313 (46 - 358)38 (540 - 577)
definitionCHROMAT_FILE: MSMg01no064_l14.b1 PHD_FILE: MSMg01no064_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005CHROMAT_FILE: MSMg01no064_l14.g1 PHD_FILE: MSMg01no064_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTAAAAATACAAGTGTATAGTTTTGGGTCCTTCAGACATTCC
TTTAGTGTATAAAGAAATCCTAGAAAAGGACTTACGGTTATGATTCTAAA
ACTTCTGATGCCTATACATTGCATTCTTTTGTAAAATATTAAAGTATGTT
CTATTTGCTTCTAGGACTCTGGTAATTTTATCTCTTATAGAAACCAACCC
ATCTTCTGAGATGCAGTCATATATACTTTTAAGTAACTTTCAGTATAAAA
TTTGAAGACCTTCTCTTGTTTTCCAAATTTAGCATTTTAATATATTACTA
TGCTTCTTATTTTCCCCTACATTCCACAACCTGCTTCTCTCCTTTTCCTT
GGAGACCAATCTTGTTTATGTGGCTTCATGAAACTCCAGGAAAACAGGTT
AAAAGACTGTGATATTCAGGATAAAGCCCTTGTAATTAGCATTTCGGATC
TAAGATTCAGTTTATGCTTCAGGCTAATCTGTATTTATTTCATAGACAGT
TCTGCAATGATGAAAGTCAAATCTGTGTATTTATGTACATGCATGTTTTG
AGGGGGGTTGCTGTTATAATTCTACCAATGTTTTTATTTTTTTCTTGCTT
CCTTTCAGTATGCAAATCAGTGTATAAAAATTCACTTTGAGAGAATTCAA
TTCCAGTGGCTTGATTTTTTTCTGTGCCCTGCC
ACGATGCAGTGGGTAGCCTGGCGGCCCCCCGGGCCTCCAATTTAAGGGAA
CCAATAAAAGAATCCCGGAATTCCACCTAAAACATATAGTCCGAATAACG
GAATGACCCCCAACTGAACAAGCATTGATTCCCACCATCCGCGGGGTACT
GGGGTGGGGTTTCCTCCAAAATACCTTTCCGGTGGGCTTAATTTTTGAAT
TACCAAAGCCGCACATACCCTGGGAATAAAACTGAAAAGCCAAAATAAAA
AAAGGGAAAAGGTGAACCCCCCGGAACCCCAGGCCCCCGGAATTACCTTA
ATAACCCCAAAATAATTTGGCCCAACCCCAAAATCCGGATGAACCCCCCA
AGCCCATAAACCTTTTTTTTATGCCCCCCCCCCCCCCTCCTTTTCCACAT
AATAAGGCCCGGTTAATAACCGGCGGTAAAGAACATTCCACTCCCCACCT
CCTTTTACTACCCCTTAAGGTCCTCCCCAACCAATACCAAGGGACCTTTT
TTCCTGGTTGAAAAAATTTTTTGGAAAATAATTTGCCCAAAACCCTGGTG
GTGGTTTTTTCCGGTTACCTCCCCCCCCTGGATTTTTAACCTTTTGCACC
ACCTAAGTAACCCGTGGCTCCATGAAAATTTCTGGAGTCTATTCTCCAGG
TTACCCAAAATACCACCCCTTTTTCCTCCTCCCCCGGACCAATTGCTTTT
TCCTTTTCAAAACTACTAATTCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l14.b1 MSMg01no064_l14.b1 CHROMAT_FILE:
MSMg01no064_l14.b1 PHD_FILE: MSMg01no064_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:53 2005
         (313 letters)



>mm_chr2_49096683_49097393
          Length = 711

 Score =  559 bits (289), Expect = e-164
 Identities = 302/307 (98%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtaaaaatacaagtgtatagttttgggtccttcagacattcctttagtgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattctttgtaaaaatacaagtgtatagttttgggtccttcagacattcctttagtgta 450

                                                                       
Query: 65  taaagaaatcctagaaaaggacttacggttatgattctaaaacttctgatgcctatacat 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 449 taaagaaatcctagaaaaggacttacggtcatgattctaaaacttctgatgcctatacat 390

                                                                       
Query: 125 tgcattcttttgtaaaatattaaagtatgttctatttgcttctaggactctggtaatttt 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 tgcattcttttgtaaaatattaaagtatgttctacttgcttctaggactctggtaatttt 330

                                                                       
Query: 185 atctcttatagaaaccaacccatcttctgagatgcagtcatatatacttttaagtaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atctcttatagaaaccaacccatcttctgagatgcagtcatatatacttttaagtaactt 270

                                                                       
Query: 245 tcagtataaaatttgaagaccttctcttgttttccaaatttagcattttaatatattact 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 269 tcagtataaaatttgaacaccttctcttgttttccaaatttagcatttta--atattact 212

                  
Query: 305 atgcttc 311
           |||||||
Sbjct: 211 atgcttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 711
Length adjustment: 9
Effective length of query: 304
Effective length of database: 702
Effective search space:   213408
Effective search space used:   213408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)