BAC Information

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BAC

Clone NameMSMg01-064M09
Chromosome2 (Build37)
Map Location 66,630,094 - 66,630,848
singlet/doubletsinglet
Overlap genenone
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
Downstream geneLOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064M09.T7 (MSMg01no064_m09.b1)MSMg01-064M09.TJ (MSMg01no064_m09.g1)
ACCAG290149AG290150
length1,2511,414
length of high quality
(start - end)
751 (93 - 843)---
definitionCHROMAT_FILE: MSMg01no064_m09.b1 PHD_FILE: MSMg01no064_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:58 2005CHROMAT_FILE: MSMg01no064_m09.g1 PHD_FILE: MSMg01no064_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTCCTNTNNNTCACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGGGATATATAGGCAACCATTAAAGTATCTCAGTTT
GAGTTTCCAAAATTCTTCTACCCCTAGACATAATCACTAAAGAAAATTAG
AAGAAATTTAAATTAAATATTTTAGTTTAGAAAAGATACTAAACACTTAA
AGTGGGGATTTCTACTCATATAGGATTTTTTGAGCTGTTTCATACATTCC
TTGGTTTTATAATACCATCTTGATCCTAGGAATAAGACTATAAAACCTAT
TAGCCTGTCTGAAATTCATGTTCAAAATGTTCCTAACCACAATTCATTCC
AGTTTCAATTACATCTTCATCAGCCACCTGCAAGTACTTCCCAGACAGGC
TTGGGAGAGGCCCAGGGGACTCAAAATGATAAAAATAAAATAGAAACCAT
AATTGGTAAGTTTCAGCTTGTTGTCACTTACTGGAAGTTATTTTTTTCAC
TGCCTGTGTACATGTGAAATTGTTAATATGTTTATACCATGTATATGAAT
CAGATTTCAGCACTATAATCTCTTAACATAAGAGTAACTAAAAACCAGCA
GAGTTTGTGTCTCTCAAACAGAATTTGTGGAGAGCCACAGTGTTCCAAAG
AATTTGGCTCACTCAAATTTGTTAACTCTTTGTACTTTGGGATCTATTAC
TGCTTCCAGGATGTCTAATGAATGTACTAGCTAAAACATCTGAATGCAAT
TATTTATTTCACATAGGAATTTTCAGGTGATGAGTTCAGATAGATCAGTA
TAGTAATAGGTTTTCATTAGTCTTGTAAAGTGATTAGTTTTCCAAATATT
TATTTTATTTTACTTAATTATCATTGCATGAATGTATGTACCTCACACAA
ACACACACACACACACACTCACACACACAAAAACCCTTTTTCAAACTCTT
TCTTAAACACTCATCTTCTTCCCCAAAAGGCAGAACAGGAAACAACGGGC
TTAAGGGAGAATTCTTTCTTTTCTACATAAATTTTTGGGGAAAAAAAACC
TCCTTTTTCAACTTTGGGCCCCCAAGAATGGTTTTCTCTTCGGGGGCCTT
TTTCCGGGGAGCCCCTTTCTTTTTTTTTTTTCCAACCTTGGTGTTTGGGT
TAAAAAAAAATATTATGTTGGAGAGCCATTTTCCGCTTTTATAAGGGGCG
GGAGCGAAAGAAATACTAATATATTGGCGTCTCTAAGGATCAATTCCTGT
T
NNNAAGTAGGGGGCGGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGGGCCAGGAAGCAGGAATGGGGGGGTTGGTGAG
TAGGAGGAGGGGAGGATTTCTCCCCCCTTTTTTTTTCTTTTTTTTTTTTT
ATTTTTTTTGTTTTTTCTGATGGTTTCTTTGTTTTCGTATTGTTTTTTAG
GTTTTATTTATGTGAAAGTGGAGATGGTTTGGTAATTTTTGTATTTTGGT
GTATTGTGTATTGAATATGTTGTAGTTAATATATTTGTATTTTTTATAAG
ATTTGTTCTGTGAATTTGATTTTTTTTTTTTATGTATTTATGGATATGTT
TTTATGTTTTGTTACTGTATTTTTAATTGGATTATATAGTCATGATAGGG
TTTTTTTTTTATCCCTAGGTGCTGTGATGATAGTGTTGTTGGTTTAAAGA
AGAAATTTTTTTTTTTTCCCCCCCCCCCCAAGGAGANNTGCTTCTCAAAA
AAAAAAAAAGGGGGGGGNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTG
TTTTTTCTGGTTTTTTTCTTTCTTTGTGTTGTGTTTTGTTTTTGTTTTTT
TTGTTTTTTTTGTGGTTCTTGCTTTTTGTTTTTTTTTTGTTTTTTGTGTT
TGTTTTTTTTTTGTTTGTCTTTTTTTTTTGTTTTTTGTGTTTTTTTTTTG
GTTTCTTCTTTGTTGTGTTTGTTGTTTTTTTGTGTTGTTTTATTTGTTTT
TATTTTTCTGGTTATTGTCTGATTTTTTTAATATGTTTTTTATTGTATAT
GATTATGTTGCAGTTATTTTATTTATAAATTTAGTTTTTTTATGTGTTGT
TTGATTATGTTGTTTTATTGTTGTAAATAATGTTAGGTTGTTGGGGTTGT
GTTTTTTATGAATAATTATTTATTTATTTTTTTTTACTAATTATAGTCGA
TGGTTTTTTTACTATATTTTTGATTTATGTTTTGTTATTTGTTCTTGTTG
TTGTTATGTATTTTTATATTTGGTGTTATTTATATTTCTTTTAATTAATG
TGTTTTGGGTGTATGTTTTTGTTGTTGTTATTAGTTTTATGTCATTATTG
TATATAATATTATTTATAGTTTGTTGTTTTGATTATTTGGTACGATATAT
TTAGTGTATTTTCTGTTAATTTTATTGTTTTATTGATATGGTTTTTGAGT
TTGTCATGGTTCTTTATTGGATTGTTGTAATTGTGTTTTTATTTATTATT
AGTATTTTGTTTAGAGAATATGATGTTCTGATGTTTGTGCAGTTTATTGT
TTATTTTGTTTATTGGTTATTTGTATGTTTCTAGTTATATTTTAATTAGT
CTACTATAGATGTAATTGTATATTGATATGGTTTATGTAAATTTTTGTCA
TGTATTGATATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_m09.b1 MSMg01no064_m09.b1 CHROMAT_FILE:
MSMg01no064_m09.b1 PHD_FILE: MSMg01no064_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:58 2005
         (751 letters)



>mm_chr2_66629894_66631048
          Length = 1155

 Score = 1352 bits (699), Expect = 0.0
 Identities = 740/759 (97%), Gaps = 12/759 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagtttgagtttccaaaattcttctacccc--taga--cataatcactaaagaaaatt 56
           ||||||||||||||||||||||||||||      ||||  ||||||||||||||||||||
Sbjct: 201 ctcagtttgagtttccaaaattcttcta----aatagagacataatcactaaagaaaatt 256

                                                                       
Query: 57  agaagaaatttaaattaaatattttagtttagaaaagatactaaacacttaaagtgggga 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaagaaatttaaattaaatattttagtttagaaaagatactaaacacttaaagtgggga 316

                                                                       
Query: 117 tttctactcatataggattttttgagctgtttcatacattccttggttttataataccat 176
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttctactcatacaggattttttgagctgtttcatacattccttggttttataataccat 376

                                                                       
Query: 177 cttgatcctaggaataagactataaaacctattagcctgtctgaaattcatgttcaaaat 236
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttaatcctaggaatcagactataaaacctattagcctgtctgaaattcatgttcaaaat 436

                                                                       
Query: 237 gttcctaaccacaattcattccagtttcaattacatcttcatcagccacctgcaagtact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttcctaaccacaattcattccagtttcaattacatcttcatcagccacctgcaagtact 496

                                                                       
Query: 297 tcccagacaggcttgggagaggcccaggggactcaaaatgataaaaataaaatagaaacc 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 tcccagacaggcttgggagaggcccaggggactcaaaatgataaaaataaaataaaaacc 556

                                                                       
Query: 357 ataattggtaagtttcagcttgttgtcacttactggaagttatttttttcactgcctgtg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ataattggtaagtttcagcttgttgtcacttactggaagttatttttttcactgcctgtg 616

                                                                       
Query: 417 tacatgtgaaattgttaatatgtttataccatgtatatgaatcagatttcagcactataa 476
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcgtgtgaaattgttaatatgtttataccatgtatatgaatcagatttcagcactataa 676

                                                                       
Query: 477 tctcttaacataagagtaactaaaaaccagcagagtttgtgtctctcaaacagaatttgt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctcttaacataagagtaactaaaaaccagcagagtttgtgtctctcaaacagaatttgt 736

                                                                       
Query: 537 ggagagccacagtgttccaaagaatttggctcactcaaatttgttaactctttgtacttt 596
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 737 ggagagccacagtgttccaaagaatttggctcactcaaacttgttaactctttgtacttt 796

                                                                       
Query: 597 gggatctattactgcttccaggatgtctaatgaatgtactagctaaaacatctgaatgca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gggatctattactgcttccaggatgtctaatgaatgtactagctaaaacatctgaatgca 856

                                                                       
Query: 657 attatttatttcacata----ggaattttcaggtgatgagttcagatagatcagtatagt 712
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 857 attatttatttcacataacttggaattttcaggtgatgagttcagatagatcagtatagt 916

                                                  
Query: 713 aataggttttcattagtcttgtaaagtgattagttttcc 751
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 917 aataggttttcattagtcttgtaaagtgattagttttcc 955


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1155
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1145
Effective search space:   848445
Effective search space used:   848445
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)