Query= MSMg01no065_c23.b1 MSMg01no065_c23.b1 CHROMAT_FILE:
MSMg01no065_c23.b1 PHD_FILE: MSMg01no065_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:37 2005
(540 letters)
>mm_chr2_124439236_124440175
Length = 940
Score = 1011 bits (523), Expect = 0.0
Identities = 535/539 (99%)
Strand = Plus / Minus
Query: 1 gcagcgtctgaatgaagcttcctcactctgtaattctgtgactaaaactgtatcaccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcagcgtctgaatgaagcttcctcactctgtaattctgtgactaaaactgtatcaccccc 680
Query: 61 taaagtgtcactgctgtggccacctgccacttaaggctggaacaagctaccctgtaagtg 120
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 679 taaagtgtcactgctgtggccacatgccacttaaggctggaacaagctcccctgtaagtg 620
Query: 121 aaagacaccttgcaagccaccaggccttgtggcaggtggacttccaaccctgaatgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaagacaccttgcaagccaccaggccttgtggcaggtggacttccaaccctgaatgaggg 560
Query: 181 gcctgtctggcgtaggttgtgaaaagatggaaacttcctgttctgggtgttagctttagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcctgtctggcgtaggttgtgaaaagatggaaacttcctgttctgggtgttagctttagt 500
Query: 241 taccacagccagacaatgttgccagtggtgtggaagaaaagattgctgtagccagctgtg 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 taccacagccagacaatgttgccagtggtgtggaaggaaagattgctgtagccagctgtg 440
Query: 301 ctattcacagttggatggattctgtgtacctccaaatggtgatagagccagcagcctgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctattcacagttggatggattctgtgtacctccaaatggtgatagagccagcagcctgtt 380
Query: 361 ggaaccaaggacaggatgatggatgatctacatactgtgtccaagtggagaggatggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggaaccaaggacaggatgatggatgatctacatactgtgtccaagtggagaggatggcag 320
Query: 421 aagttcacttcagggttgttaaaatgctaatctgggtaagttaacaaagcccaatagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagttcacttcagggttgttaaaatgctaatctgggtaagttaacaaagcccaatagaaa 260
Query: 481 agagaagtttgagaaaacactagcactcgtgtgggctctggactccactgatctgaagg 539
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 agagaagtttgagaaaacactagcactcgtgtgggctctggactccaccgatctgaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_c23.g1 MSMg01no065_c23.g1 CHROMAT_FILE:
MSMg01no065_c23.g1 PHD_FILE: MSMg01no065_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:37 2005
(595 letters)
>mm_chr2_124352019_124353011
Length = 993
Score = 1019 bits (527), Expect = 0.0
Identities = 580/603 (96%), Gaps = 10/603 (1%)
Strand = Plus / Plus
Query: 1 actgtccattagctggagctgagatgtgcatgcatgatttcccacactactggcaggaaa 60
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 193 actgtccattagctgaagctgagatttgcatgcatgattttccacactactggcaggaaa 252
Query: 61 gcctacatttgggctgggcacaggtagttcaaaaagaaaatag--------atggacata 112
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 253 gcctacatttgggctgggcacaggtagttcaaaaagaaaatagatggacatatggacata 312
Query: 113 tggacataatgtaaataagtgcattagtctattaaccttcagcatcttgggatagctatg 172
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 tggacataatgtatataagtgcattagtctattaaccttcagaatcttgggatagctatg 372
Query: 173 gatacccttgagaccatgctggccttccccgagagtgagacttgcacaagggtttttcta 232
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 373 gatacccttgaaaccatgctggccttcccccagagtgagacttgcacaagggtttttcta 432
Query: 233 gagctcaaaccattgtatggagctccctgtactgggaaacttgctgaatctcttacatgt 292
|||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 433 gagctcaaaccattgtctggagctccgtgtactgggaaacttgatgaatctcttacatgt 492
Query: 293 aagagcctagcagtctcggaggttgttctaaacatgaagatacttattaacaaaattaaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagagcctagcagtctcggaggttgttctaaacatgaagatacttattaacaaaattaaa 552
Query: 353 tttctccatgcatgtgtttcagttggtgttttagagcgttttctctctgccttatgaatt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttctccatgcatgtgtttcagttggtgttttagagcgttttctctctgccttatgaatt 612
Query: 413 gagggtcatcgtccgctgtctgactccttgcagcttagtgctggctcaaagtgtggttcc 472
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 613 gagggtcatcgtccgctgtctgactccttgcagcttagtgctggcaca--gtgtggttcc 670
Query: 473 gtagcaaactcaagtgagagataactagtcacaaaacaccataattttgtgcacccaaag 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttagcaaactcaagtgagagataactagtcacaaaacaccataattttgtgcacccaaag 730
Query: 533 gactgtgacattcatggtaaatatgcccacaagccagtctggaaagatggctgggcattt 592
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 731 gactgtgacattcatggtaaatatgcccacaagccagtctggaaagacggctgggcattt 790
Query: 593 act 595
|||
Sbjct: 791 act 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 993
Length adjustment: 10
Effective length of query: 585
Effective length of database: 983
Effective search space: 575055
Effective search space used: 575055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
