BAC Information

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BAC

Clone NameMSMg01-065I20
Chromosome2 (Build37)
Map Location 140,509,021 - 140,509,259
singlet/doubletsinglet
Overlap genenone
Upstream gene5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I20.T7 (MSMg01no065_i20.b1)MSMg01-065I20.TJ (MSMg01no065_i20.g1)
ACCAG290735AG290736
length687678
length of high quality
(start - end)
225 (74 - 298)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no065_i20.b1 PHD_FILE: MSMg01no065_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:05 2005CHROMAT_FILE: MSMg01no065_i20.g1 PHD_FILE: MSMg01no065_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGATGCATACCGAATGTGAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGCTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTTCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGTCTGATGCCGGAACGATCCCA
CATGCCCCTCATTCGACGACTGGATACAGAAAACGTGTTATCTCTATTTT
ATGGAGTACTACTCATTTATTAACAAGAATGATTTTATGACATTCTCTAG
TCAATGTATGGACCTGTAGGGCATTCTCTTGAGTGATGTAACACATTCCC
AAAGGAACTTTTTTAATATGTACTCTCTCATAAGTGGATATTTAGCCCTA
TCTTATGATTATCCCCATATTACATTCCATTTCCCCC
CCTCATGATGTGGTAGGCTGGCGGCGCCTGGTTCTAAATATAGGTGAACT
ATAGAATTTCCGCGAAATCTATACTATCTGGATGGATAATCGGGGTGTCA
CAAATGACCCCTGTGACGGAGATGAAACAAACATAAACGTTTAAGTGATA
GGGTTGTTGCTGTCGTTGTTTTAGTGTTAGGGCTTGAACCCATGGCATTA
CAGATGCCTGACAAACATGCTGAATCACATCTCAGCCCCAGAAACATTTG
CTTTATTAAAACAACGAAGCAAACACTAAGATCATACACTGGCAGACAAC
ACCACTGGCAGAAATATTTTGAGAGATCATTGTTATTCAGAATATATAAT
TACCTATTAAATTTTATCAAGAAAAATTCACATAACACAGGAAGCACAAA
ATATATATATCGCATTTCAGCATAAAGACACCAAGGTATACAACATCATG
CTCATTAGATTATCCAATCCAGCTAGAGACCCATCAAGTAATAACTCATC
CCTATTGCTAGATACCTATGAATCCCTTTGAAGAATTATCAGGAATTGCT
GACTGCCCACACATTCTCAACCTTTTTCCTTTCAGGCATCTTGTTTCTCC
TGGGCTGACGCCGATATTCTTCCAGGGAAACTTGTCCTCTTTGCCTGCCT
CTCCTATAGTATGTTTATCCGATTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i20.g1 MSMg01no065_i20.g1 CHROMAT_FILE:
MSMg01no065_i20.g1 PHD_FILE: MSMg01no065_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:06 2005
         (243 letters)



>mm_chr2_140508817_140509459
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tactatctggatggataatcggggtgtcacaaatgacccctgtgacggagatgaaacaaa 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactatctggatggataatctgggtgtcacaaatgacccctgtgacggagatgaaacaaa 384

                                                                       
Query: 65  cataaacgtttaagtgatagggttgttgctgtcgttgttttagtgttagggcttgaaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cataaacgtttaagtgatagggttgttgctgtcgttgttttagtgttagggcttgaaccc 324

                                                                       
Query: 125 atggcattacagatgcctgacaaacatgctgaatcacatctcagccccagaaacatttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 atggcattacagatgcctgacaaacatgctgaatcacatctcagccccagaaacatttgt 264

                                                                      
Query: 185 tttattaaaacaacgaagcaaacactaagatcatacactggcagacaacaccactggca 243
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 tttattaaaacaacgaagcaaacacaaagatcatacactggcagacaacaccactggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)