BAC Information

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BAC

Clone NameMSMg01-065L21
Chromosome2 (Build37)
Map Location 83,532,829 - 83,533,166
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15
Downstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L21.T7 (MSMg01no065_l21.b1)MSMg01-065L21.TJ (MSMg01no065_l21.g1)
ACCAG290879AG290880
length759768
length of high quality
(start - end)
340 (137 - 476)348 (153 - 500)
definitionCHROMAT_FILE: MSMg01no065_l21.b1 PHD_FILE: MSMg01no065_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:20 2005CHROMAT_FILE: MSMg01no065_l21.g1 PHD_FILE: MSMg01no065_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGTTTTTGTTTTTTTTNGNTTTTNTTNNTNTTTTTTTTTTTTTTGTTGC
GGTTCCTTATTTTTATCTATAATTGCGGCGCTAAACGACTCCTATAGTCC
GAAATACGCGGAATTCCTAAATTATTACCAAGGAGGATGCCCTCATGGCT
TCCATTTTCTTACCACTCACTCATTTCCTTGGTTTCTTGAAATTTGGATT
CCATCCTTGGTTTGCTTTCTGAACATAATTCCTTCAAAGAGTTATCAATT
ACCCTACGTTTGGCAACACGTTCAGTTTTTTTTTTCCTTGGCCTTTATGC
ACCGTTGAGCACAGGAGGGCATCCCGTTCTCCTGAGCCTTTCTTCCTCCT
CCGTGCCACTTGTAGGCTCAGCTAGACCTCTATATCTCTGTTCTGTCCAG
AGGTGTCCTTTCTGGCTTCTCTTCTTCCTTTCACAAGCTCTGAGTAAATA
ACCTACTGTTAGCTTTCAATCCGAGACAAACGCCTGAGCTGCCTACTTAA
CATATCAAAGCCGACCTGGCTACCAGGTTCTCCCAGCATTCCTCAGTCCC
TGGATGGAATACTCCACCCCCACCCTAAACGCTCCAGCAGAGCTGGACTG
ATCTTCCCTATATGATCCAACCATCTCCATCTCCATAATATACCAGAGAC
TCTAATTTATTTATGTATATCTGAGTAACTTACTTTGCCATCTCTCAGCT
GGCTCATATAACTTAAACTAATTTATTCCAACTCTGATACTTGCCCCTAG
CCCCTGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTCTTTTTATTAATCGATGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTACCTGACTATGGAAATAGCTTTTTCCAAAAGACCACTTGCCTCCTGA
AACTTAACCTTTTGCCTAATATTGTATCCTAGTTAATACCATGCTTTGAG
ATCATTTAAAATTATGTATTCAATCTGTTTCCCTACTATGTATTCGACCT
GTTTTCGTTTAACTTATCTTTAAGAGATTAGTTACAATGTAACCAATCTC
ACGATGTCTTGAAATTCCCATGTAATTTACTTTAACAAAATAAACTAAAT
GCATAGTTTTAGTCTCAGATCATTTTCCCTGTCTCTCCTTGGTGGCTCTT
CCATGCCCCTGACACAGAATAATAAATATTCATTGCGTTATTCATTTCCC
TGAAAGAGTCAATATGTTGAAAGCTACCCTAAAGAAAATGTTTGCCACAT
ATGTTTGAAGCTACATATGGATATAGGTTGATAGCATCTGTTTGCTGCTT
GGAGTGTTACTTGCCACCAATAAATTCTTCCCTTGTAAATGCTGGTAAAA
TAATAGTTGGTATTATTATTATTATTATCATCACCATTATTATTATTATC
ATTAGAAGAGATTCCTCATTCACTTTCCTTACCATCTTCTGTACTATCCA
TCAAATATATGCCTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l21.b1 MSMg01no065_l21.b1 CHROMAT_FILE:
MSMg01no065_l21.b1 PHD_FILE: MSMg01no065_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:20 2005
         (340 letters)



>mm_chr2_83532629_83533366
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 335/340 (98%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccctcatggcttccattttcttaccactcactcatttccttggtttcttgaaatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccctcatggcttccattttcttaccactcactcatttccttggtttcttgaaatttg 260

                                                                       
Query: 61  gattccatccttggtttgctttctgaacataattccttcaaagagttatcaattacccta 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gattccatccttggtttgctttctgaacataattccttcaaagagttaccaattacccta 320

                                                                       
Query: 121 cgtttggcaacacgttcagttttttttttccttggcctttatgcaccgttgagcacagga 180
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 321 cgtttggcaacacgttcagtttttttt--ccttggcctttatgcaccgttgagcacagga 378

                                                                       
Query: 181 gggcatcccgttctcctgagcctttcttcctcctccgtgccacttgtaggctcagctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggcatcccgttctcctgagcctttcttcctcctccgtgccacttgtaggctcagctaga 438

                                                                       
Query: 241 cctctatatctctgttctgtccagaggtgtcctttctggcttctcttcttcctttcacaa 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctctatagcactgttctgtccagaggtgtcctttctggcttctcttcttcctttcacaa 498

                                                   
Query: 301 gctctgagtaaataacctactgttagctttcaatccgaga 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctctgagtaaataacctactgttagctttcaatccgaga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 738
Length adjustment: 9
Effective length of query: 331
Effective length of database: 729
Effective search space:   241299
Effective search space used:   241299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)