BAC Information

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BAC

Clone NameMSMg01-065P13
Chromosome2 (Build37)
Map Location 169,278,959 - 169,279,485
singlet/doubletsinglet
Overlap genenone
Upstream geneNfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P13.T7 (MSMg01no065_p13.b1)MSMg01-065P13.TJ (MSMg01no065_p13.g1)
ACCAG291055AG291056
length662652
length of high quality
(start - end)
528 (59 - 586)563 (50 - 612)
definitionCHROMAT_FILE: MSMg01no065_p13.b1 PHD_FILE: MSMg01no065_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:37 2005CHROMAT_FILE: MSMg01no065_p13.g1 PHD_FILE: MSMg01no065_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGATCACTATTCGGAGGTATCCGCGGAATTCTTTCTTTG
CTGATGATGAAGGTAGAACTATGCCCGCCTGCCTGCATGCCCAGAGCCCT
TGCTTCATTTAGCTTCAGCATCCAGAGCACAAAGGCATGCAGGTAGCTTC
TTTACTGAGAAGACAGAAGAGCTCATAATAAGAGAGGGACAAGGAAAGCC
AGAGTGGCCAGCACCCACATGGGTCAATCCTAACAAAAAAAAATGGTACT
GATGCAAACTCTTGAGAAGAAAAAATTTACAGCACTGTCATTTAGGTGGG
CCTAATTGGTTATTAAATCCAAATATTCAATGGTTATTTGTGTGCATTAT
AACCCCCAAATCACTTGCTATTTTGTGTTTTGGGATTTTTTTTTTTTTAG
ACTGACCTAGGTTAGCCTAGAACTATGTGGTACAGGCAAATCTTGAACAC
TTGCTTGCTCCTCCTACTTCAGCCTCCTGTGTACTGGGACTAAGATGTGA
ACAACATCTTGTGTCACATCTTGATGTGACTCAGCAGAGATTTTGACATT
GTAGCAAACTGTATCTTGTTGTATAATAACCATACATCTTCAGCAAAAAA
TAAATAATCCAAACATACAAAGGCTCCTGGGTTGTAAAACAGCAACCTAC
CAGTGTATTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCCGAGAA
ATTCTTTGTTTAGCTCTGTACCCCATTTTTAAAATAGGGTTATTTTATTC
TCTGGAGCCTAACTTCTTGAGTTCCTTGTATATGTTGGATATTAGCCCTC
TACCAGAGGTAGGGCTGGTAAAGATCTTTTCCCAATCTGTTGTTTTCCAT
TTTGTCCTATTGACAGTGTCCTTTGCCTTTGCAATTTGACAAGATCTCAT
TTGTCGATTCTTGATCTTAGAGCGTAAGTCATTGGCGTTCTGTTCTTTTT
AATTTCCCCTGTGCCCATGTGCTCAAGGCTCTTCCCCACTTTCTCTTCTA
TTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACCCCCAC
TTGAGCTTTGTACAAGGAGGTAAGAATGGATCGATTCGCCTTCTTCTAAA
TGCCCACCACCAGTTGAATCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TCCACTGGATAGTTAAAGCTCCTTTGTCAAAGATCAAGTGACCATATGTG
TGTGGGTTCATTTCTGGGTCTTCGATTCTATTCCATTGATCTACCTGCCT
GTCTCTGTACCAATACCATGTATTTTTTATCAATATTGCACTGTAATACT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p13.b1 MSMg01no065_p13.b1 CHROMAT_FILE:
MSMg01no065_p13.b1 PHD_FILE: MSMg01no065_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:37 2005
         (528 letters)



>mm_chr2_169278959_169279886
          Length = 928

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaggtagaactatgcccgcctgcctgcatgcccagagcccttgcttcatttagcttcag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaaggtggaactatgcccgcctgcctgcatgcccagagcccttgcttcatttagcttcag 468

                                                                       
Query: 61  catccagagcacaaaggcatgcaggtagcttctttactgagaagacagaagagctcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catccagagcacaaaggcatgcaggtagcttctttactgagaagacagaagagctcataa 408

                                                                       
Query: 121 taagagagggacaaggaaagccagagtggccagcacccacatgggtcaatcctaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taagagagggacaaggaaagccagagtggccagcacccacatgggtcaatcctaacaaaa 348

                                                                       
Query: 181 aaaaatggtactgatgcaaactcttgagaagaaaaaatttacagcactgtcatttaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaaatggtactgatgcaaactcttgagaagaaaaaatttacagcactgtcatttaggtg 288

                                                                       
Query: 241 ggcctaattggttattaaatccaaatattcaatggttatttgtgtgcattataaccccca 300
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 287 ggcctaattgggtattaaatccaaatattcaatggtcatttgtgtgcattataaccccca 228

                                                                       
Query: 301 aatcacttgctattttgtgttttgggatttttttttttttagactgacctaggttagcct 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 227 aatcacttgctattttgtgttttgggattttttttttttgagactgacctaggttagcct 168

                                                                       
Query: 361 agaactatgtggtacaggcaaatcttgaacacttgcttgctcctcctacttcagcctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 agaactatgtggtacaggcaaatcttgaacacttgcttgctcctcctacttcagcctcct 108

                                                                       
Query: 421 gtgtactgggactaagatgtgaacaacatcttgtgtcacatcttgatgtgactcagcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gtgtactgggactaagatgtgaacaacatcttgtgtcacatcttgatgtgactcagcaga 48

                                                          
Query: 481 gattttgacattgtagcaaactgtatcttgttgtataataaccatac 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gattttgacattgtagcaaactgtatcttgttgtataataaccatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)