Query= MSMg01no066_b20.b1 MSMg01no066_b20.b1 CHROMAT_FILE:
MSMg01no066_b20.b1 PHD_FILE: MSMg01no066_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:48 2005
(446 letters)
>mm_chr2_50266983_50267829
Length = 847
Score = 596 bits (308), Expect = e-174
Identities = 376/422 (89%), Gaps = 39/422 (9%)
Strand = Plus / Minus
Query: 1 catataaacattttaaacttcagaaggctggacctggaagg-atacaaagtgctctgaaa 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 catataaacattttaaacttcagaaggctggacctggaaggtatacaaagtgctctgaaa 359
Query: 60 atggggcagtgtttacagttttcaaaagttcactatttagacatcttgggaattatggct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atggggcagtgtttacagttttcaaaagttcactatttagacatcttgggaattatggct 299
Query: 120 agtagaagctgtgtgcatagggtcatctccgctgtgaacacagaccattccctgaacaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agtagaagctgtgtgcatagggtcatctccgctgtgaacacagaccattccctgaacaca 239
Query: 180 cacacgttttaaaaacactcattc----gtgtgtgtgtgtgt------------------ 217
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 238 cacacgttttaaaaacactcattcatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 179
Query: 218 ------------tccttagccattgtcttagtcagggtttctattcctgcacaaacatca 265
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 178 gtatgtgtgtcttccttagccattgtcttagtcaaggtttctattcctgcacaaacatca 119
Query: 266 tgaccaagaagcaagttggggaggaaagggtttattaggcttatacttccatactgctgt 325
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 118 tgaccaagaagcaagctggggaggaaagggttt----ggcttatacttccatactgctgc 63
Query: 326 tcatcaccaagtcaggactggaactcaaacaggtcaggaagcaggagctgatgcagaggc 385
|||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 62 tcattaccaagtcagaactggaactcaagcaggtcaggaagcaagagctgatgcagaggc 3
Query: 386 ca 387
||
Sbjct: 2 ca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space: 364932
Effective search space used: 364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_b20.g1 MSMg01no066_b20.g1 CHROMAT_FILE:
MSMg01no066_b20.g1 PHD_FILE: MSMg01no066_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:48 2005
(563 letters)
>mm_chr2_50133939_50134901
Length = 963
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%)
Strand = Plus / Plus
Query: 3 gaattcagttggtgttcacagtgatggaaggtcaagaaagacaaacatgctttaaattta 62
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 gaattcagttggtgttcaaagtgatggaaggccaagaaagacaaacatgctttaaattta 262
Query: 63 aagcgagagaacttgtttgaagtgtagcattctacagttgaattgtcagttatgtattaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagcgagagaacttgtttgaagtgtagcattctacagttgaattgtcagttatgtattaa 322
Query: 123 ttaaaattttaaagatatatatttcagtaaactttaaaaggaatttgaagcatgtggagt 182
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaaaaatttaaagatatatatttcagtaaactttaaaaggaatttgaagcatgtggagt 382
Query: 183 acaattcctgtttgtttattaaatgtagcactagaattagttaaccctaaagttctttca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaattcctgtttgtttattaaatgtagcactagaattagttaaccctaaagttctttca 442
Query: 243 acataaattatgcaacccttctgatacttagtagacctcttgtttgccattaagagtgaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acataaattatgcaacccttctgatacttagtagacctcttgtttgccattaagagtgaa 502
Query: 303 caaacatctataaatgaaagaatcacagctatgttcctgtgctgggtcttacatttagcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caaacatctataaatgaaagaatcacagctatgttcctgtgctgggtcttacatttagcc 562
Query: 363 agataacattaaacatttcatgttcgtgtggcctcgtgtaagatgaaacggatagctgaa 422
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 563 agataacattaaacatttcatgttcgtgtggccttgtgtaagatgaaatggatagctgaa 622
Query: 423 gcattttcctggattgcaggacctgattaccaaccgcttcctactgttcctatcaacagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcattttcctggattgcaggacctgattaccaaccgcttcctactgttcctatcaacagg 682
Query: 483 tcatttattggcagacgcctctcacttagactttatgacagtgtaataagctctgcgggg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcatttattggcagacgcctctcacttagactttatgacagtgtaataagctctgcgggg 742
Query: 543 caagagaatgagaccctctag 563
|||||||||||||||||||||
Sbjct: 743 caagagaatgagaccctctag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
