BAC Information

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BAC

Clone NameMSMg01-066D01
Chromosome2 (Build37)
Map Location 156,049,581 - 156,230,719
singlet/doubletdoublet
Overlap genePhf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik
Upstream geneItch, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39
Downstream geneLOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066D01.T7 (MSMg01no066_d01.b1)MSMg01-066D01.TJ (MSMg01no066_d01.g1)
ACCAG291222AG291223
length695699
length of high quality
(start - end)		460 (77 - 536)298 (78 - 375)
definitionCHROMAT_FILE: MSMg01no066_d01.b1 PHD_FILE: MSMg01no066_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:54 2005CHROMAT_FILE: MSMg01no066_d01.g1 PHD_FILE: MSMg01no066_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,230,259 - 156,230,719)(156,049,581 - 156,049,878)
sequence
TCTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAACCGCG
GAATTCACTGTAGCTGTCTTCAGAACACCAGAAGAAGGCATCAGATCCCA
TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGA
CCTCTGGAAGAGCAGCCAGTGCTCTTGACCTCTGAGCCATCTTTCCAGCC
CCCTAAAAAATCCAGTTCATTTTTTGTGACTAGAAAATGCATGCAAATTT
GCAAAATTTTAAGGTCATAAAAAAGGTATGTGTACTTTAAAATTAATTTC
TCAACTCTTCTCAGACTTTTGGATAAGATCAGATTTTAATATATATTCCT
TTAGTTATTTCCAGCTACATATTCCTTCTCCTACCATTGTCAGTTTAAAA
TTTTTTTTTAATTATTTATTCTTAGTTCATGTGCAGTGGTATTTTGCCTG
CATGTATGCCTGTGTAAAGGTGTCAGACGCCCTGCAACTGGGGTTACAGA
TAGACAATTGTGAGCTGCCACGTGCCGCTTGGTCCTCTAGAATAACAACC
GATGCTCATAACCACGGAACCATTTCTCCAGCCCCCCTCCTCCCATTATC
AGTTTTAAAACTCTCATTTCAGAGAATATATGTGCTTATGTACTCACAGC
TGCCTAAACTCTTTGAGATGTTGCTGTGTCCTTGTGGACTTGTGG

ATTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTGCGAAAAACAGTTTGTTTTGTGTGATGAGGTTTC
TGGTAACCTAGGCTGACCTTGAATTGATAGACCAGCCTCCTAAGTGCCGG
TATTACAGATCCCTGCCAGTCTGGCTGCCTTTTGTCCTCTGCCTGTCAGA
TACTTTGAACATTCCTGTGAATGTGGTCACAGTCACTGGTAACGTTGGCA
TCAGGGGATTATTCTGAGAGTCATATATTGAATATTTGGAGAGCACTCTC
AGAAACTAAACATAACTGGGTGTGTTTATATATCTGTACTGTGAGCAACC
CGGAGGCTAAGGTAGGGGTTTACTAGGACTGGAGCAGAGCCTGGCATAGT
GAGTTCTAGACCAGCATAGCCTACAGAGTGAATTCCTGACCCTAGATGAT
AAACTAGCCACCGGAAGTTCAGGTTCAGTTGTTAGAGTGTTTGTCTAGTA
AGCGTGAAGCCCTACGTTGTAGTCCCAGCTGTATATATACCTAGGTTTGT
AGAGACATAGTTTGGTTTATTAGATGTTTATGGCTATCTTATCCTGCTGC
TTAATGAATATGTTATCTCTTCTAATTAGATGAACAAAATTCTACGGACA
GTCCAATAACTTTATTTCTTGTTGTCTATTATCTTCTAGTTTTCTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_d01.b1 MSMg01no066_d01.b1 CHROMAT_FILE:
MSMg01no066_d01.b1 PHD_FILE: MSMg01no066_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
         (460 letters)



>mm_chr2_156230077_156230936
          Length = 860

 Score =  853 bits (441), Expect = 0.0
 Identities = 456/461 (98%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagaagaaggcatcagatcccattacagatggttgtgagccaccatgtggttgctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 accagaagaaggcatcagatcccattacagatggttgtgagccaccatgtggttgctggg 584

                                                                       
Query: 61  aactgaactcaggacctctggaagagcagccagtgctcttgacctctgagccatctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aactgaactcaggacctctggaagagcagccagtgctcttgacctctgagccatctttcc 524

                                                                       
Query: 121 agccccctaaaaaatccagttcattttttgtgactagaaaatgcatgcaaatttgcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agccccctaaaaaatccagttcattttttgtgactagaaaatgcatgcaaatttgcaaaa 464

                                                                       
Query: 181 ttttaaggtcataaaaaaggtatgtgtactttaaaattaatttctcaactcttctcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttaaggtcataaaaaaggtatgtgtactttaaaattaatttctcaactcttctcagac 404

                                                                       
Query: 241 ttttggataagatcagattttaatatatattcctttagttatttccagctacatattcct 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 403 ttttggataagatcagattttaatatatgttcctttagttatttccagctacatattcct 344

                                                                       
Query: 301 tctcctaccattgtcagtttaaaa-tttttttttaattatttattcttagttcatgtgca 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 tctcctaccattgtcagtttaaaattttttttttaattatttattcttagttcatgtgca 284

                                                                       
Query: 360 gtggtattttgcctgcatgtatgcctgtgtaaaggtgtcagacgccctgcaactggggtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 283 gtggtattttgcctgcatgtatgcctgtgtaaaggtgtcagacgccctggaactggggtt 224

                                                    
Query: 420 acagatagacaattgtgagctgccacgtgccgcttggtcct 460
           |||||||||||||||||||||||||||||  ||||||||||
Sbjct: 223 acagatagacaattgtgagctgccacgtggtgcttggtcct 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no066_d01.g1 MSMg01no066_d01.g1 CHROMAT_FILE:
MSMg01no066_d01.g1 PHD_FILE: MSMg01no066_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
         (298 letters)



>mm_chr2_156049381_156050078
          Length = 698

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttttgtgtgatgaggtttctggtaacctaggctgaccttgaattgatagaccagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttttgtgtgatgaggtttctggtaacctaggctgaccttgaattgatagaccagcc 260

                                                                       
Query: 61  tcctaagtgccggtattacagatccctgccagtctggctgccttttgtcctctgcctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaagtgccggtattacagatccctgccagtctggctgccttttgtcctctgcctgtc 320

                                                                       
Query: 121 agatactttgaacattcctgtgaatgtggtcacagtcactggtaacgttggcatcagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatactttgaacattcctgtgaatgtggtcacagtcactggtaacgttggcatcagggg 380

                                                                       
Query: 181 attattctgagagtcatatattgaatatttggagagcactctcagaaactaaacataact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attattctgagagtcatatattgaatatttggagagcactctcagaaactaaacataact 440

                                                                     
Query: 241 gggtgtgtttatatatctgtactgtgagcaacccggaggctaaggtaggggtttacta 298
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgtggtgacatatctgtactgtgagcaacccggaggctaaggtaggggtttacta 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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