BAC Information

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BAC

Clone NameMSMg01-066J06
Chromosome2 (Build37)
Map Location 158,809,986 - 158,810,325
singlet/doubletsinglet
Overlap genenone
Upstream gene2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066J06.T7 (MSMg01no066_j06.b1)MSMg01-066J06.TJ (MSMg01no066_j06.g1)
ACCAG291517AG291518
length760994
length of high quality
(start - end)
340 (136 - 475)---
definitionCHROMAT_FILE: MSMg01no066_j06.b1 PHD_FILE: MSMg01no066_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:25 2005CHROMAT_FILE: MSMg01no066_j06.g1 PHD_FILE: MSMg01no066_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTCTTCTTTTTTCTCTCTCTCCCTTCATTTCCTCTCTTNTTTCTTTT
AATTTTTTNTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGATAGAAGCT
AAACCTGAACAGAGTCCTTGCATAGCACCAAAAATAAGACTTACAGATGG
TGATGGGTAAGGAGTGAGGAGTAGAAGGCTCTGTAGCTCATGCATCTCAC
TGGAGCTCAATTTGAAACTTCAGAATAAACCAATTCATCTTTAAATAGGT
TCAAGACCCAGGAGGTATAGTCTATCCTTGCATCTGTCTGAGACTCTGGA
AGTTTGGGAGACTTGCCATTGCAAGACAGCCTACAGTGAAGTAGACTCCT
TAGTCCAACTGATGAGAGTCTAACCCTTTGAGGATGAGAGATAACAGTGA
AGTTAAATATCTTGCCTACAAAACTTCTGTAATAAGTCTAGAGTCTCGAT
CAAAGCCAGCTATCTGTGACCTTCCATTTTATGTCACCTCCTGCTTTGTC
TTTTATGTGTTGGACCAAATCCCTAAAACGGTTTCACTTCTGGCAGCATA
TGGCGTTAGTCACCTGCTAAAACAAAGTCCTCTTATCCTTACCTCTTTAT
TGTTTTGCTCTTCACTTGATGTTATTTCTCCAATTGTATTACTCCCTATG
GGCGATGGCTATAGCGAGTTTTTTGATATTTTCCAATTTTTGTTTTTACC
TCGTCGCTCC
CCCCCCCCCCNNNCCCCCCCNNCNCCCNNNCCNCCNNCCNCCCCCCNACC
CCCCCGCAATCGTCGCGCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCATAAAATCCNNGCGGAATTCAAGGGTGTTTCCTCGAAAGGAG
CTCTAGGAGGTGCTGAACAGCTGTGTGATTGTTAGGACATGCAGAGGTCA
AGTTCGTCACGCCCTCCTAGCAGTGGTGTCAGGTTCCCTCAGTCTACAAG
AGGTGTCATGGTAATGTCAGCTTCCTGAATGTGAGTCTTTCATTCTCTCA
CTAGACTTCGATGTGTACTCGCGTAATCTTGTCTGTGTCAAGTAGGTTTG
ACCTATCTACACCATTGCCTCAATTGTGTCATGATAGCTGTTTATCTATA
TTACAGCTACAGCCACTCTCTCTGGGTACATCTCTATCATTTTACTTCTC
TGTCACCGCACAGCACTAGTTGATTGCGTCTTAGGATTTATAGGTTCTTA
CGGACATACCTCTCACGCCTCTTCTTGTTTTCTATGTAGACTTCTCTCTT
GCCTCTTCCACGTTTAATCTATGTGTCCATCTATCCTTTCTCCACTCGCT
ACGTATTCAATGCTCTTCTCACGCTTGCTCTGTGATTCGCGTCTACTATA
GATAGGCCACACACTATTTCTCCTATATATGTTTTTTGACCATGCTCCAC
CATCTCCTTCCTGTTAGTTACTTACGTATTATTAATTGCAGCCATTGTTT
ATCGCAAATTGTTTCCTAATTACTGCTCACTGTTAAAATTTCTATTGTTT
ACACTCATTAAGCAAGAAACTCGGTAGCATTGTACTACTTTATCATGATC
AACTCTCCCTCATATTGTATCCCNAAATAGNTAACCTATATACTTCTAGC
CCGTATATCCCTACCCATAATTGCGCTTCCTACTTGCCTTAAAAACTCTT
TTTCACATTTTCTCACCTCTATTTCTTTATTTTATATTTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_j06.b1 MSMg01no066_j06.b1 CHROMAT_FILE:
MSMg01no066_j06.b1 PHD_FILE: MSMg01no066_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:25 2005
         (340 letters)



>mm_chr2_158809786_158810525
          Length = 740

 Score =  588 bits (304), Expect = e-172
 Identities = 331/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggatagaagctaaacctgaacagagtccttgcatagcaccaaaaataagacttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caaaggatagaagctaaacctgaacagagtccttgcatagcaccaaaaataagacttaca 481

                                                                       
Query: 61  gatggtgatgggtaaggagtgaggagtagaaggctctgtagctcatgcatctcactggag 120
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 480 gatggtgatgggtaaggagtgagaagtagaagactctgtagctcatgcatctcactggag 421

                                                                       
Query: 121 ctcaatttgaaacttcagaataaaccaattcatctttaaataggttcaagacccaggagg 180
           |||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct: 420 ctcaatttgaaacttcagaataaaccaattcatctttaaataagttcaacccccaggagg 361

                                                                       
Query: 181 tatagtctatccttgcatctgtctgagactctggaagtttgggagacttgccattgcaag 240
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 360 tagagtctatccttgcatctgtctgagactctggaaatttgggagacttgccattgcaag 301

                                                                       
Query: 241 acagcctacagtgaagtagactccttagtccaactgatgagagtctaaccctttgaggat 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acagccaacagtgaagtagactccttagtccaactgatgagagtctaaccctttgaggat 241

                                                   
Query: 301 gagagataacagtgaagttaaatatcttgcctacaaaact 340
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 240 gagagataacagtgaagttaaatatcttgtctacaaaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)