BAC Information

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BAC

Clone NameMSMg01-066K22
Chromosome2 (Build37)
Map Location 75,595,275 - 75,595,728
singlet/doubletsinglet
Overlap genenone
Upstream geneHoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
Downstream geneLOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066K22.T7 (MSMg01no066_k22.b1)MSMg01-066K22.TJ (MSMg01no066_k22.g1)
ACCAG291597AG291598
length711739
length of high quality
(start - end)
459 (40 - 498)207 (118 - 324)
definitionCHROMAT_FILE: MSMg01no066_k22.b1 PHD_FILE: MSMg01no066_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:33 2005CHROMAT_FILE: MSMg01no066_k22.g1 PHD_FILE: MSMg01no066_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
ACTTCTCTTTCAAAAAAAATAGGAAAAGAAAAACGAAGGGACGTGCATGG
AGTGAAGAAGGGTGGAGAGAGGAAGCTGAGAGCTTGACTCACTGCAGCCT
TTGAGAGGAGGATTAAGCTTCCACCCCCTCAGCCTGATGCGGTCAACTCC
CACTTTGGAAAATAAAGCAGATCTTGACACGAAAGCAGTTTACAATGGCT
CAACCAAGAATAGGAAGGAGCTAGATTTGCTAGCGTCCAGATTGCAGTTT
AAATGTGGGAACATGCCTGGTTATGAGGTCTCTGTCCTCAATAGCTAGGG
TGAGGAGCCAGCTTGGCTAGTGATCAGAGGGTGGACACACAGATAAAGAA
CACATGGCCTACGTGCACCATTGGGGATATTATTCTGCCTTAAGGGGGAT
CAGAATTCCGTCATCTGCAGCGAAATGGGAGATGTTGTGCTAAGGAAAAG
AAACCAGACATAGAAAGCCAAGAACCACATGTTCTCTGTTATACACAGAC
GCTCGAGAAGTTGAAGGGAGTGTAGGGCAGTGTCAGCTAGAGCTTGGCAA
GGTTGCAGGAAGGAGGAATTAAAGCAAGCTGCATTTGATTAACACACGCA
CCGTTCATACAGTGGATTAACACACCATCCTTTCATTCACAAGCATTCTT
TTATATATATN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGAGAGCCAGGGCTACACAGAGAAAC
CCTGCCTCANAAAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGGGCTGGA
GAGATGACTCCGTGGTTAAGAGAATTGACTGTTCTTCCAGAGGACCCAGG
TCCAGGTTTCATTTCCAGCAACCACAGAGTGGCTTACAACTGTCAGTAAC
TCCAGTTCCAAGGGTCCCAGTGACCTCTTCTGGTATCAGGCATGCACGGT
ACACAAACACACATGCAGGCTAAACTCTCATGAATGTAAAATAAGATAAA
AATAAAAATTGTGTTGTTGGGGTGAAGGTAAAGATTCAGCTGGACAGTGT
GATTGGCATTCATGGGTTTGAAACTGGGTACAGAAAAAAATTTCCTTCAA
GTTGTAAAATAACATATAGATGTTATCTTTTGTTTGTTTGGTCGGTTTGG
TTTTAGTTTTTGGTTTTGGTGTATTGAGATCAGGTTTTCCCCTTTGCACT
CCCGCATGTCCCTGAAATTCACTTCTGTCATTTATACTGTTCCTCAAACT
TATTATAAAAAACCTTTTTTCCTGCTTTCACAAGTTGATCGTCGATTCAC
CTTCTTGTCTATCCACATCATTTATTCCGGCTTCTTTTTTGTTTTCCACC
CCCTTATTAATTCTGGCAACCCAATTTCTTTATTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_k22.b1 MSMg01no066_k22.b1 CHROMAT_FILE:
MSMg01no066_k22.b1 PHD_FILE: MSMg01no066_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:33 2005
         (459 letters)



>mm_chr2_75595071_75595928
          Length = 858

 Score =  804 bits (416), Expect = 0.0
 Identities = 445/458 (97%), Gaps = 7/458 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacttctctttc---aaaaaaaataggaaaagaaaaacgaagggacgtgcatgg 61
           ||||||||||||    ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattccacttc----tcgggaaaaaaaataggaaaagaaaaacgaagggacgtgcatgg 603

                                                                       
Query: 62  agtgaagaagggtggagagaggaagctgagagcttgactcactgcagcctttgagaggag 121
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 602 agtgaagaagggtggagagaggaagctgagagcgtgactcactgcagcctttgagaggag 543

                                                                       
Query: 122 gattaagcttccaccccctcagcctgatgcggtcaactcccactttggaaaataaagcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gattaagcttccaccccctcagcctgatgcggtcaactcccactttggaaaataaagcag 483

                                                                       
Query: 182 atcttgacacgaaagcagtttacaatggctcaaccaagaataggaaggagctagatttgc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 atcttgacacgaaagcagtttacaatggctcaaccaagaataggaaggagctagattcgc 423

                                                                       
Query: 242 tagcgtccagattgcagtttaaatgtgggaacatgcctggttatgaggtctctgtcctca 301
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 422 tagcgtccagattgcagtttaaatgtgggaacatgcctggttatgaggactctgtcctca 363

                                                                       
Query: 302 atagctagggtgaggagccagcttggctagtgatcagagggtggacacacagataaagaa 361
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 362 atagctagggtgaggagccagcttgggtagtgatcagagggtggacacacagataaagaa 303

                                                                       
Query: 362 cacatggcctacgtgcaccattggggatattattctgccttaagggggatcagaattccg 421
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cacatggcctatgtgcaccattggggatattattctgccttaagggggatcagaattccg 243

                                                 
Query: 422 tcatctgcagcgaaatgggagatgttgtgctaaggaaa 459
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 242 tcatctgcagtgaaatgggagatgttgtgctaaggaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)