BAC Information

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BAC

Clone NameMSMg01-066L08
Chromosome2 (Build37)
Map Location 13,590,470 - 13,590,711
singlet/doubletsinglet
Overlap geneSt8sia6
Upstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim
Downstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L08.T7 (MSMg01no066_l08.b1)MSMg01-066L08.TJ (MSMg01no066_l08.g1)
ACCAG291617AG291618
length668748
length of high quality
(start - end)
242 (57 - 298)87 (125 - 211)
definitionCHROMAT_FILE: MSMg01no066_l08.b1 PHD_FILE: MSMg01no066_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:35 2005CHROMAT_FILE: MSMg01no066_l08.g1 PHD_FILE: MSMg01no066_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCCCATTACCAACCACTGCACACTGGTTATAGGGATAGTCCACA
AAAGGCTGTGACTGGTGGGAGAGAGGGGAAACCAATCAACACAGGCTTGC
TTAACAACTAGAAGCAAGGCTACAATGTGGCTCAGTAGAAGATCTCCAAT
TCCCAGGACTCTTACAGAAAAGAAGCCACAAATACCATTAGCTGGGTTCC
AGAAGCTTGGCTTTTCCTGTGTGTTTAGGAGAAGGAAAAAGAGTAAGAAA
TATAAACAGAAGCAAACTTTAGAGGGGGTAAAAAAACAGAAAAGCACCAA
AGGGGCTACAGAGATGACTCCTTTAGTAAGAGCATTTGCTGTGAAAAGAT
AACTGAGTTCAAATTACCAGCTCCCATGAAAAACCATAGACAGGTCTGCA
ATCTAGCCCAGTGTATGAAGAGGCAGGGGAATCCTGGGAGCTCCAGTTTC
TGGTCATCCGGTCTAACCTAAGCAACAAGCTCCAGTTTCCACGGTAGGTT
CGTGCCAGCCTGATAACATAATGTATAGACTACTCTATTTAGACTCTGGG
ATGCCTCCTATTTATATGTGTGCCCCCTCTGTATGCACTTCCTCCATCTG
TTCTACCCTCCTTGCCCT
CCCCCCCCCCCCCCCCCCNCCTCCCCCCCCCCTCCCCTCNNNATTCTACC
CCTTCCTTCATATTTGCGGCGCTAAACGACTCCTATTTCTGAGGACCGCG
GAATCANGATTTTCCGCAAAAGATGGAGAGGGTGGACAGCCTTGTCTTGT
TTCCCAATTTAGCGAATTGCTTTGAGTTTCTTTCCATTTAATTTGATGTT
GGCTATGGGCTTGGTGTAAATTGTCTTTATTTTGCTTGCACACATTCCTT
GTAGTCTTAACCTTCCCAGGACTTTCATCAAAGTTCTTTCATGCTTTTAA
TAACACAATCTTGCGTGCTTTTTCTGTCACCCCGCCCACCCGTTGCATTA
CATTTCTATCTTTTTTTGTTCTGCACCTATTGTATGTGCCCTCGCATTCT
GTCTGTCACATCCACTTCCGTATATTTGTTTCTATGTTTCCACTCACTCC
TGTTCTGTTATCCTCTTTCTTTCCTCCTTCTTTTTTTCGATTTCAAATCT
TTCATCCAGTGATCCCCACATATATGACTTGTTTTTTCCCTCTCCCGTTC
TATTTTTTTCTTCTTCTTTTTTCACCTTTTTACCCCATTTCTTTTCCTAC
TTAAATTTCTATTTAAACTATTACTCAAATCATTTATATTAATCTATTTA
TTATACATAATTTTTTTCTTTTCATTTATTTTTTCAATTATCCACTTATT
CCTTATTTTTTAATTTCTTTATCTTTTACTTAATTCTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l08.b1 MSMg01no066_l08.b1 CHROMAT_FILE:
MSMg01no066_l08.b1 PHD_FILE: MSMg01no066_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:35 2005
         (242 letters)



>mm_chr2_13590270_13590911
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccattaccaaccactgcacactggttatagggatagtccacaaaaggctgtgactggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ccccattaccaaccactgcacactggttatagggatagtccacaaaaggctgcgactggt 260

                                                                       
Query: 61  gggagagaggggaaaccaatcaacacaggcttgcttaacaactagaagcaaggctacaat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gggagagaggggaaaccaatcaacacaggtttgcttaacaactagaagcaaggctacaat 320

                                                                       
Query: 121 gtggctcagtagaagatctccaattcccaggactcttacagaaaagaagccacaaatacc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 321 gtggctcagtagaagatctccaattcccaggacccttacagaaaagaagccacaaatgcc 380

                                                                       
Query: 181 attagctgggttccagaagcttggcttttcctgtgtgtttaggagaaggaaaaagagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagctgggttccagaagcttggcttttcctgtgtgtttaggagaaggaaaaagagtaa 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)