Query= MSMg01no066_p15.b1 MSMg01no066_p15.b1 CHROMAT_FILE:
MSMg01no066_p15.b1 PHD_FILE: MSMg01no066_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:57 2005
(596 letters)
>mm_chr2_116006270_116007264
Length = 995
Score = 1122 bits (580), Expect = 0.0
Identities = 592/596 (99%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 1 gaaaggagactcttatctctctccctttgcaaaaaccaactcaaaatgaactgaagacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaggagactcttatctctctccctttgcaaaaaccaactcaaaatgaactgaagacct 260
Query: 61 taatgtggaaacccactatagaaaacatgaagatattggcatagacaataacttcctgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtggaaacccactatagaaaacatgaagatattggcatagacaataacttcctgac 320
Query: 121 caggacttcagtatttgaggaaataatggtaaggcttgacagaaaggaccacacttaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggacttcagtatttgaggaaataatggtaaggcttgacagaaaggaccacacttaatg 380
Query: 181 gagagccctacccagaaggagcacactgaactgagagccctgcacaattcagggaatact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagccctacccagaaggagcacactgaactgagagccctgcacaattcagggaatacg 440
Query: 241 caacagggcggatgagattgctttaggagcaatcagcagatatgcaaattgatacaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagggcggatgagattgctttaggagcaatcagcagatatgcaaattgatacaaatt 500
Query: 301 gatgtaaattgataccactagtatgaaaaacactagaagctgtctcaaaaaccgaatgat 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgtaaattgataccactagtatggaaaacactagaagctgtctcaaaaaccgaatgat 560
Query: 361 gcaacaatcagataatgagcttcaggtgatcctccagtgctgttggaagctttaatttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaacaatcagataatgagcttcaggtgatcctccagtgctgttggaagctttaatttgt 620
Query: 421 tggcacggaggtttgctttatggatagtgaaacaggtaaacacggaggcatctgacattg 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tggcacggaggtttgctttatggatagtgaaacaggtaaacatggaggcatctgacattg 680
Query: 481 gattggcacctgttctgttgactctcctgagacatcccagaactctacccagatctgata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattggcacctgttctgttgactctcctgagacatcccagaactctacccagatctgata 740
Query: 541 ttcttccaaggtggatatttgtctagcacctcatgctgtgacttcttttctatggc 596
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ttcttccaaggtggatatttgtctagcacctcatgctgtgacttcttt-ctatggc 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space: 577210
Effective search space used: 577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_p15.g1 MSMg01no066_p15.g1 CHROMAT_FILE:
MSMg01no066_p15.g1 PHD_FILE: MSMg01no066_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:57 2005
(591 letters)
>mm_chr2_116160857_116161847
Length = 991
Score = 839 bits (434), Expect = 0.0
Identities = 475/496 (95%), Gaps = 13/496 (2%)
Strand = Plus / Minus
Query: 109 gttcagacatttaaataataattactcccaaagtgtgtgcaaaagtaaaggggaaagtgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 gttcagacatttaaataataattactcccaaagtgtgtgcaaaagtaaaggggaaagtgt 932
Query: 169 tgtctgataagaataggttctagaatatttatgtaatagaaaagagcgccctgtgtttgg 228
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 931 tgtctgataagaataggttctagaatattcatgtaatagaaaagagcaccctgtgtttgg 872
Query: 229 gctaaagtgtaacatttggttttcattctgcgctattcaaatttacatgcatggaattcc 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 871 gctaaagtgtaacatttggttttcattctgcgctattcaattttacatgcatggaattcc 812
Query: 289 ------------cat-gcatgagcaaagtatcagtcaaaatccaccagacagatgtgaaa 335
||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagtaatatctacatagcaagagcaaagtatcagtcaaaatccaccagacagatgtgaaa 752
Query: 336 attaaattttccagtaagttataatgtaaaagtgaatgctggtgcattggagggttggat 395
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 751 attaaattttccagtaagttataatgtaaaagtgaatgctggtgctttggagggttggat 692
Query: 396 ggcagagggaaccttgtctgtaggtgtgctttgcaactacagcaatgtggcaaattttga 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggcagagggaaccttgtctgtaggtgtgctttgcaactacagcaatgtggcaaattttga 632
Query: 456 ttacaaaaatctgagacagtactccactaataaggatgagtaagggcaaaggaaatgtcc 515
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 631 ttacaaaaatctgagacagtactccactaataaggatgagcaaaggcaaaggaaatgtcc 572
Query: 516 cttagtgactcagatgcttaatatcaaagtaaatatggaagacaggcttctcttctgctt 575
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 571 cttagtgactcagatgcttaatatcaaagtaaatatggaagacaggcttgtcttctgctt 512
Query: 576 cccgcaccaagcacct 591
||||||||||||||||
Sbjct: 511 cccgcaccaagcacct 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
