Query= MSMg01no067_a15.b1 MSMg01no067_a15.b1 CHROMAT_FILE:
MSMg01no067_a15.b1 PHD_FILE: MSMg01no067_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:02 2005
(266 letters)
>mm_chr2_112464356_112465021
Length = 666
Score = 408 bits (211), Expect = e-118
Identities = 250/263 (95%), Gaps = 2/263 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcatgtgtccatgcattgtaaatgcaaattctcccgtgtgtgtccatgcacaa 64
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcttcatgtgtaaatgcattgtaaatgcaaattctccagtgtgtgtccatgcacaa 264
Query: 65 agcaatg-ctcgcccccgagcatagagcttgctgcccgcaatcattctccatgcttgctt 123
||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 agcaa-gcctcgtggccgagcatagagcttgctgcccgtgatcattctccatgcttgctt 323
Query: 124 atgttgctatcatacattgttcacttacctcgagagctcagagaagtgcactctggttta 183
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 324 atgttgctatcatacattgttcacttacctcaagatctcagagaagtgcactctggttta 383
Query: 184 cacagtggtctaaggcacagtgttttgagttggctttgtgtttgtagtcagactaggtag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacagtggtctaaggcacagtgttttgagttggctttgtgtttgtagtcagactaggtag 443
Query: 244 gtgaaggttggagtgataatggg 266
||||||||||||||| |||||||
Sbjct: 444 gtgaaggttggagtggtaatggg 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no067_a15.g1 MSMg01no067_a15.g1 CHROMAT_FILE:
MSMg01no067_a15.g1 PHD_FILE: MSMg01no067_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:02 2005
(279 letters)
>mm_chr2_112621194_112621872
Length = 679
Score = 391 bits (202), Expect = e-113
Identities = 254/286 (88%), Gaps = 26/286 (9%)
Strand = Plus / Minus
Query: 1 agattgtcctgggatatgtacttaactccaagagaatcattgggtacag-actttgttat 59
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 597 agattgtcctgggatatgtacttaactccaagagaatcattgggtaaagaactttgttat 538
Query: 60 cacttccccagatcagctgaggtgtgatagctcagttatcttcttaaccattcaaggaaa 119
|||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||
Sbjct: 537 cacttccccagatcagctgaggcgtgatagcttagttatcttctt-actattcaaggaag 479
Query: 120 gaggccaagtgttaactcctcggggcttagtaagatatgaagctcttttgtctgcaagtc 179
|||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 478 gaggccaagtgt------------------taagatatgaagctcttttgtctgcgagtc 437
Query: 180 acttgtaaatgaacttgttagcaggagattgagtggtatctgtggcctcaacatggtagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acttgtaaatgaacttgttagcaggagattgagtggtatctgtggcctcaacatggtagg 377
Query: 240 gtcatccctgaggtt------aaaaaaaaaaaatcctgagctgaag 279
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 gtcatccctgaggttaaaaaaaaaaaaaaaaaatcctgagctgaag 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
