Query= MSMg01no067_a21.b1 MSMg01no067_a21.b1 CHROMAT_FILE:
MSMg01no067_a21.b1 PHD_FILE: MSMg01no067_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:03 2005
(297 letters)
>mm_chr2_44154219_44154921
Length = 703
Score = 545 bits (282), Expect = e-160
Identities = 296/304 (97%), Gaps = 8/304 (2%)
Strand = Plus / Minus
Query: 1 aacctcttttt-aaaaaagacacagagctatcttcatgcttttcccttctatgagaaagc 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacctctttttaaaaaaagacacagagctatcttcatgcttttcccttctatgagaaag- 445
Query: 60 ac------ttttttttttaaggcagaggagacttgatagaggagaaaaagaaagaacata 113
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatttttttttttttttaaggcagaggagacttgatagaggagaaaaagaaagaacata 385
Query: 114 gattttcttaatggttcattattcaatgagtcccacattattcaagagtctcattttgta 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattttcttaatggttcattattcaatgagtcccacattattcaagagtctcattttgta 325
Query: 174 aatacacacaaatcaatggtgctaataaactttgcaatattgtaactcctattttctaat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatacacacaaatcaatggtgctaataaactttgcaatattgtaactcctattttctaat 265
Query: 234 gaccaaaaccaagagggcaggttgactccacagaagcactgtgcttaaaactactcttgt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaccaaaaccaagagggcaggttgactccacagaagcactgtgcttaaaactactcttgt 205
Query: 294 aatt 297
||||
Sbjct: 204 aatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 703
Length adjustment: 9
Effective length of query: 288
Effective length of database: 694
Effective search space: 199872
Effective search space used: 199872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_a21.g1 MSMg01no067_a21.g1 CHROMAT_FILE:
MSMg01no067_a21.g1 PHD_FILE: MSMg01no067_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:03 2005
(289 letters)
>mm_chr2_44011568_44012256
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%)
Strand = Plus / Plus
Query: 1 tctctgacttcatgagtcagcccatgttcaaggcagaatatctgtatttaccttgagttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tctctgacttcatgagtcagcccatgttcaaggcagaatatctgtatttaagttgagttt 260
Query: 61 ttgtgaaagactataggtccataggaagaagagaggaattaggtgtagccagtgatccat 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttgtgaaagactataggtccataggaagaagagaggaattaagtgtagccagtgatccat 320
Query: 121 atatagacagtttcacgtgtggttaaggttcaagaacataccacggtgagagttgtcaac 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 atatagacagtttcacgtgtggttaaggttcaagaacataccatggtgagagttgtcaac 380
Query: 181 tatattctgttctgtccaagagagaaggaaaaaagtccttgatttcagattctattgata 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tatattctgttctgtccaagagagaaggaagaaagtccttgatttcagattctattgata 440
Query: 241 ccaagagaatgaaacatctcttcatcacatttaaatgtatagaggccct 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagagaatgaaacatctcttcatcacatttaaatgtatagaggccct 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
