BAC Information

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BAC

Clone NameMSMg01-067B12
Chromosome2 (Build37)
Map Location 146,547,253 - 146,547,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B12.T7 (MSMg01no067_b12.b1)MSMg01-067B12.TJ (MSMg01no067_b12.g1)
ACCAG291913AG291914
length714714
length of high quality
(start - end)
75 (78 - 152)105 (133 - 237)
definitionCHROMAT_FILE: MSMg01no067_b12.b1 PHD_FILE: MSMg01no067_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:06 2005CHROMAT_FILE: MSMg01no067_b12.g1 PHD_FILE: MSMg01no067_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGAG
AATTCCAGGCCAGCCCAACCTATCTAGTGAGACACTGTCTACTCAGTGAG
GTACTGTCTCATCCCCATTATAGGGCTAGAGATGTAGCTCACTTGCTAAG
TGATCAAAAGTGAGCAAAACTGAGGCTTAAAACACAGCGCAAGAGACATA
GATCATTTACACCATCATTGAAATGAAGATTCGGGGCTCGGCAGCAGACC
TAACAGAATTAGTATTGCTGAATCAGGTATACTGAAATTGCGCCATTTGA
GACTATTTTTATTGAAGAAAGCTTGCAGCCTCAGAATACCATTTACAATA
TCTTTTTTTTTACTCCCCCCCACCCCCAGACAGGCTATGCGCAGAAGAAG
GTTGCAATAAACCCTAGTATAAAGTAAAAAACACATTTCCTGGGTGGCGA
GAACTCACATCTCAATGATATTTTTATTATTTCTCTTTAAATCCCCTCCC
CCGACCCATTATTCGTTTCTAATTCTTTATTTTCCACTTTCCTCTCTTGG
GTCTGAATCTTGTCACTCATTTCTTTTCTACTCGTTATTACACCTGCATT
GTTTACTTTCTCTTTCTGCGTTTTTTCTCCCTTATATTTACGCCCTTTGT
CCTTTCGGAATTTACCTTCTTTTTTATCTCCACTTCATTTTTCCCCCCAC
CAATTATTCTCCAT
AATCATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGAGAAATGGGCTAAAAGAAACC
GGAGTATCAGGGGGGAGGGCAACGAGGCGGGTTCGAAAGAAGAACTCCAC
AGCCTTTCTTCAGATGGGTTTAATTTTGTCACTTGAGTCAAAATTGGAAA
CCCGTTTTCTAGTACAATTGCTTCTGTGTTTAGTGAGTGTTGCAGACTCT
TTATTACAGGGGAATTTTATAAACTTGGCACCTCATCATCAAGCCATCTT
GGGGGCCAACTTCCCACTTGTTCTTTTAGCTCTAAAGCAAGTACTTTATA
AAAGTGTTTACTGATTTGCCCCCCCCCCCCCCAGATTCTGAGATGAGTGT
TTAAACCTAATTCCTTCCCCACAAAATCATAAAAAACACTTCTTGTGGGG
GGCTGCCTACGTCCTGTTTCTTTCTTATCCACATGTACCACGACTTCTTT
TAACATGCGCATCAAATTATTATATGTAGCATTTCGTGTCCACTTCCCGC
TTTTTCGCTCTCTGTGATATGCCGTTGCTGCCCCGTTCTGTCGCTTTCTT
GTTCCTTGTATTTCCTTTCTGTACTCCGTCATGTTTTTATCTCCTTTGCT
TCCCCGCCCGCCTATTTTATTTTGTTACTTTTTTTTTTCCGCCCCCCCAC
CTGTGATATATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b12.g1 MSMg01no067_b12.g1 CHROMAT_FILE:
MSMg01no067_b12.g1 PHD_FILE: MSMg01no067_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:06 2005
         (105 letters)



>mm_chr2_146547053_146547557
          Length = 505

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgaaagaagaactccacagcctttcttcagatgggtttaattttgtcacttgagtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgaaagaagaactccacagcctttcttcagatgggtttaattttgtcacttgagtcaaa 260

                                                        
Query: 61  attggaaacccgttttctagtacaattgcttctgtgtttagtgag 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggaaacccgttttctagtacaattgcttctgtgtttagtgag 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)