BAC Information

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BAC

Clone NameMSMg01-067C10
Chromosome2 (Build37)
Map Location 19,695,412 - 19,695,600
singlet/doubletsinglet
Overlap genenone
Upstream genePip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
Downstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067C10.T7 (MSMg01no067_c10.b1)MSMg01-067C10.TJ (MSMg01no067_c10.g1)
ACCAG291957AG291958
length703715
length of high quality
(start - end)
312 (45 - 356)189 (72 - 260)
definitionCHROMAT_FILE: MSMg01no067_c10.b1 PHD_FILE: MSMg01no067_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:10 2005CHROMAT_FILE: MSMg01no067_c10.g1 PHD_FILE: MSMg01no067_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAATTCTGAACATCTATGCTCCAAATGCAAGGACAGTCACATTCA
TTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCATCTCACACAGTA
ATAGTGGGAGACTTTAACACCCCACTCTCATCAATAAACAGATCCTGGAA
ACAGAAACTAAATATAGACACAATGAAACTAACAGAAGTTATGAAACAAA
TGAATTTAACAGATATCTATAGAACATTTTATCCTAGACCAATGGGTGGA
TACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGACAGGAGTTA
CAGAGTATTTTTGTTTGCCACCCCCCACAAAAGGTTGGACTATCCAGAGA
CTACCCCACCCGGTGATCCATCAAATAATCAGCCACCAGACCCAGACACT
ATTGCATATGCCAGAAAGATGTTGCTGAAGGGACCCTATTATAGATGTCT
CATATGAGGCTATGCCAGTGCCTGGCAAATACAGAATTGAATGCTCATAG
TCATCTATATTACGGAACACAGGTTCCCCATTGCAGAAGCTAGAGAAAGC
TCTCTCTGGAGCTGAATGCGTCTGCAATAATATAGGTGGAAAAACAACAT
GAACTATCCATTTACCCCCCCCCCCCGAGCTCGTATCTTTAGTTTGCCAT
GAC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGCTCTTTTTCTGAACTCAGGCACCAG
GTACATACATGCAGGCAAAACACTCATACACATGAAATACATCTTTAATT
AAGAGAAAAGAACAAATATCTAAGCATAAAAAAGAAGTTAGTGATATTTG
TCAATTTCTTGACATTTATGTAGTAACTAAAAAAACATTAGCTCAGAATT
TTGAAAGGACACAGCGGGATGAAGATGTTTTACTTGTTAACATACCCATT
AATATAAACTCATACTAAAGATTATGCTACAAGAATCTGAGAGAGCAAGT
AAATTATATTCACCCTTTATGTTACTTGGTTTGGTTTGTCTTGGTCTGTC
CCCTCCACTCCCTTTTTCATTATATCTTCTTTTTCCTTTTTTCCCTTCCC
CCTCTCTTTTCTTCCTCCTTTTCCTTTCCTCTTCATACCTCTTCCCTTTT
CTTCTTCCTTATTTCCACTTTTTCTCCTCCTCCTCTTTTCCATTTTCCTT
TTATTTATCGCCTTCACTAATACACATTCCCTATATCTTACCATTTGCCT
TTCACCCTAAATTCCTCTTATTTTTCCCTTTATCCCCCTCTAACTTTCTT
TTTTTATTTTATCGTATATCTTCACGCTTCCCCTTTCTTGCCCCTTTCTT
TTCCCTTCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_c10.g1 MSMg01no067_c10.g1 CHROMAT_FILE:
MSMg01no067_c10.g1 PHD_FILE: MSMg01no067_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:11 2005
         (189 letters)



>mm_chr2_19695144_19695732
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgctctttttctgaactcaggcaccaggtacatacatgcaggcaaaacactcatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatgctctttttctgaactcaggcaccaggtacatacatgcaggcaaaacactcatacac 398

                                                                       
Query: 61  atgaaatacatctttaattaagagaaaagaacaaatatctaagcataaaaaagaagttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atgaaatacatctttaattaagagaaaagaacaaatatctaagcataaaaaagaagttag 338

                                                                       
Query: 121 tgatatttgtcaatttcttgacatttatgtagtaactaaaaaaacattagctcagaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgatatttgtcaatttcttgacatttatgtagtaactaaaaaaacattagctcagaattt 278

                    
Query: 181 tgaaaggac 189
           |||||||||
Sbjct: 277 tgaaaggac 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)