Query= MSMg01no067_e01.b1 MSMg01no067_e01.b1 CHROMAT_FILE:
MSMg01no067_e01.b1 PHD_FILE: MSMg01no067_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:18 2005
(286 letters)
>mm_chr2_49096681_49097364
Length = 684
Score = 482 bits (249), Expect = e-140
Identities = 277/287 (96%), Gaps = 4/287 (1%)
Strand = Plus / Minus
Query: 1 agttttgggtccttcagacattcctttagtgtataaagaaatcctagcccaggacttacg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 agttttgggtccttcagacattcctttagtgtataaagaaatcctagaaaaggacttacg 425
Query: 61 gttatgattctaaaacttctgatgcctatacattgcattcttttgtaaaatattaaagta 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtcatgattctaaaacttctgatgcctatacattgcattcttttgtaaaatattaaagta 365
Query: 121 tgttctatttgcttctaggactctgcg-aattttatctcttatagaaaccaacccatctt 179
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 364 tgttctacttgcttctaggactctg-gtaattttatctcttatagaaaccaacccatctt 306
Query: 180 ctgagatgcagtcatatatacttttaagtaactttcagtataaaatttgaagaccttctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 ctgagatgcagtcatatatacttttaagtaactttcagtataaaatttgaacaccttctc 246
Query: 240 ttgttttccaaatttagcattttaatatattactatgcttcaaaaaa 286
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 ttgttttccaaatttagcatttta--atattactatgcttcaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no067_e01.g1 MSMg01no067_e01.g1 CHROMAT_FILE:
MSMg01no067_e01.g1 PHD_FILE: MSMg01no067_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:18 2005
(269 letters)
>mm_chr2_48978651_48979319
Length = 669
Score = 466 bits (241), Expect = e-136
Identities = 262/269 (97%)
Strand = Plus / Plus
Query: 1 atatagtcagagtagcggagtgaccacaaactgaacaacccttgattcgcacaatcagcg 60
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 201 atatagtcagagtagcggagtgaccacaaactgaacaagcattgattcgcacaatcagcg 260
Query: 61 tgttactggggtgtggtttcttcagaaatacatttctgttgggcttaatttttgaattac 120
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttactggggcgtgggttcttcagaaatacatttctgttgggcttaatttttgaattac 320
Query: 121 aaaagcagcacatacgctgggaataaaactgagaagcaaaaatagaaaaaggtaaaagtt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagtagcacatacgctgggaataaaactgagaagcaaaaatagaaaaaggtaaaagtt 380
Query: 181 gatcctcctgtaacacaagtctcgtgtatttactttattatctcagaagtaatttgtcca 240
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 381 gatcctcctgtaacacaagtctcctgtatttactttattatctcagaaataatttgtcca 440
Query: 241 aacccagatatctgtatgaacacactagt 269
|||||||||||||||||||||||||||||
Sbjct: 441 aacccagatatctgtatgaacacactagt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
