BAC Information

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BAC

Clone NameMSMg01-067O09
Chromosome2 (Build37)
Map Location 87,699,427 - 87,699,744
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151
Downstream geneOlfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O09.T7 (MSMg01no067_o09.b1)MSMg01-067O09.TJ (MSMg01no067_o09.g1)
ACCAG292523AG292524
length706695
length of high quality
(start - end)		321 (42 - 362)300 (71 - 370)
definitionCHROMAT_FILE: MSMg01no067_o09.b1 PHD_FILE: MSMg01no067_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:08 2005CHROMAT_FILE: MSMg01no067_o09.g1 PHD_FILE: MSMg01no067_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCCCTCCTTCACTGTGTCACTTCTATGAGAAAGCTTTCCCTTCCCTT
TCTCTGTACACATAACACTGCTCATAGATTTGTCTTTGTTTGCTTTGTCC
CTTAAGGTCTTAAATAATGTTATTCTTTCTTAGATAAATGTCACCAAAAT
GCCATATTAAATATATCATAGGTCTAAGCATTTTAATTCTGAATTTCAAA
CTCTACCATCATATTTTGAACAAAGAATGTGAAAAAAGTAACAAAAGTAG
ATACTAATTAATATATTTGTTATATATTGGATGTTGGTAAAATTATTTGT
GAACTTATTATTTTTTATGCCCCTCCCCCCCAATAATGAGATGAATTTCT
TAGGAAAATACTTGAAACTACTGGATACTGAAGAATTAAATACTCGGGAG
AGGTACTAATTTGGTTGTAAGATAATAGAATTCATTTGTATATTATTTTT
CATCTTAACTTATTTTTTTCTGATAGTCTACATACTTTTCTCAGGAAAAG
ACACTTTGTATTTGAAAAGTCAAAGGTCTTAAAACATTGTTAATTATCCC
ATTGATTGGTACAAGGTTAATGTCCTGGTAATGTTTTCAGACTTTCTAGA
GTCACAGATTTGTAAACTCTCTTTCCAACTATTTTATATTTAAAATAATC
GTCTCA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTACCTCAGTTCCACATTTTGCATA
GCGTTACTTGGTTCTCTGGACTCTAACTTCTGAGTTATTTGTATACATTG
GACATTAACCATATATCAGATGAAGGATTGGTAAAGATCTTTCCCCCAAT
CTGTTGGTTTCCATTTTTTGCCCTATTGACAGTGCCATTTGCTTTATAGA
AGGTTTGCAATTTTATGAGGCCCTGCTTTTCTATTCTTGACCTAGTGCAT
AAGCCATTGTTGTTCTGTTCTGGAAATGTCTCCTATGTGTTTGAGGCTTT
TCTCCACTTTTTTTTCTATCCCCCCCCCCGCATCTGGGTTTATGGGGAGG
CATTTGACCCACTTGGACTTGAACTATAGAAAAGGGAGATAAGAGTTAAT
TAATTTGCATTCTTCTACATGTTGAACACCAGTTGAACCACCACCATTTG
TTGAAAATCCTGTCTTGGTTCCTCCCGATTTTAGCTTCCTTGTCCAAGAT
CAAGTGCCCGCAAAAGTGAGGTCTCATTTTTGCATCTTAAATCCATTTCC
ATGGTCTACCTGCCTGGCCCTTGTCCAAAACTTTGCAATTTTTATCACTA
ATGGAACTATATATATGCTTGTGTTCTGAATATGATGATTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o09.b1 MSMg01no067_o09.b1 CHROMAT_FILE:
MSMg01no067_o09.b1 PHD_FILE: MSMg01no067_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:08 2005
         (321 letters)



>mm_chr2_87699223_87699945
          Length = 723

 Score =  565 bits (292), Expect = e-165
 Identities = 311/318 (97%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccctccttcac--tgtgtcacttctatgagaaagctttcccttccctttct 62
           ||||||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctttccctccttaactatgtgtcacttctatgaggaagctttcccttccctttct 264

                                                                       
Query: 63  ctgtacacataacactgctcatagatttgtctttgtttgctttgtcccttaaggtcttaa 122
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtacacataacactggtcatagatttgtctttgtttgctttgtcccttaaggtcttaa 324

                                                                       
Query: 123 ataatgttattctttcttagataaatgtcaccaaaatgccatattaaatatatcataggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataatgttattctttcttagataaatgtcaccaaaatgccatattaaatatatcataggt 384

                                                                       
Query: 183 ctaagcattttaattctgaatttcaaactctaccatcatattttgaacaaagaatgtgaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaagcattttaattctgaatttcaaactctaccatcatattttgaacaaagaatgtgaa 444

                                                                       
Query: 243 aaaagtaacaaaagtagatactaattaatatatttgttatatattggatgttggtaaaat 302
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 aaaagtaacaaaattagatactaattaatatgtttgttatatattggatgttggtaaaat 504

                             
Query: 303 tatttgtgaacttattat 320
           ||||||||||||||||||
Sbjct: 505 tatttgtgaacttattat 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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