BAC Information

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BAC

Clone NameMSMg01-068B04
Chromosome2 (Build37)
Map Location 20,697,623 - 20,697,940
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B04.T7 (MSMg01no068_b04.b1)MSMg01-068B04.TJ (MSMg01no068_b04.g1)
ACCAG292654AG292655
length700700
length of high quality
(start - end)
323 (55 - 377)515 (84 - 598)
definitionCHROMAT_FILE: MSMg01no068_b04.b1 PHD_FILE: MSMg01no068_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005CHROMAT_FILE: MSMg01no068_b04.g1 PHD_FILE: MSMg01no068_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGCCCAACTTTTCATAGAAGGCAGTGCTGTTTATG
TATCGTTGACCTCCGTATACAGTGTCACCCATAGACCTGCCACAGCCTCT
GCAGCACAGCTAGGCTGAGCTCAAGGCTCATCCAAGCTGGTGGCTCACAC
TTCCTAATTCAACCACTTAGAGTCTGGATTTTCCACTGCTTTCTGTTAAC
AGTATGGCTGCTTGGGTTCATTTATTCAAAAGATGTTTTTGGATCCTGTT
TCAAGAGCAGAAATTAGCAAGCGGGAGGGAAGGCCATTTCAGGAGGTGGA
AGTAGCAGGCTCAAGGTCACTGTGACTGAAAGGGGCTCGGCGAGTCAGAA
AGATCAAAGGATGTTGATGTGACCATGGGAAATGTGGGAAGATATCTGAA
AAGAAAGTAGACAGGAAAGCATAGACAGCAGAGGAGGTGCATGTCTGCTC
TGTACTGACTGATCCTAGAAGCACAATGAAGGGACCTTAGCAAAGCTGGG
AGAACATGACTCTGAGTCACAGAGGTCATCAAGAACGGTACACACACTTC
CTTATCAACACTCACGGAAACCAATAACCATAACACGTAGCTATAATCTC
TTTGGCCAGTTAATCACCATGCACTGACACTGGAGCCCAGTGGTGCCTTT

TTTTNNTTTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTACTTCTGTAC
TTCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTT
CTTTATATATATTGGATATTAGTCCCCTATTTAATTTAGGGTTGGTAAAG
ATCCTCTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAGAGTGTCTTT
TGCCTTACAGAAGCTTTGCAGTTTCATTAGGTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTG
CCCATATCTTCGAGGCTTTCCCCCATTTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGGAGTTCCTTGATCCACTTACACTTGAAATTTGTCA
AGGAGGTAAGAATGCACCAATTCACATTCTTCTACATGATAAACTCCAGT
TGTGCTAGCACAATTTGTTGAAAATACTGTCTTTTTTCCACTGGATGGTT
TTAGCTCCCTTGTCACAGATCAAGTGACCATAGGTGTGTGGATTCATTTC
TGGATCTTCTATTCTAGTCCATTGATCTACCTGTTCTGTCGCTGTACCAG
TTCTATGCAGTTTTTTTTTTTTTTTTTTTTATCACATTTGCTCTGCATTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b04.b1 MSMg01no068_b04.b1 CHROMAT_FILE:
MSMg01no068_b04.b1 PHD_FILE: MSMg01no068_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:23 2005
         (323 letters)



>mm_chr2_20697419_20698141
          Length = 723

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcccaacttttcatagaaggcagtgctgtttatgtatcgttgacctccgtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcccaacttttcatagaaggcagtgctgtttatgtatcgttgacctccgtat 264

                                                                       
Query: 65  acagtgtcacccatagacctgccacagcctctgcagcacagctaggctgagctcaaggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagtgtcacccatagacctgccacagcctctgcagcacagctaggctgagctcaaggct 324

                                                                       
Query: 125 catccaagctggtggctcacacttcctaattcaaccacttagagtctggattttccactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catccaagctggtggctcacacttcctaattcaaccacttagagtctggattttccactg 384

                                                                       
Query: 185 ctttctgttaacagtatggctgcttgggttcatttattcaaaagatgtttttggatcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 ctttctgttaacagtatggctgcttgggttcatttattcaaaagatgtttttggatcctc 444

                                                                       
Query: 245 tttcaagagcagaaattagcaagcgggagggaaggccatttcaggaggtggaagtagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcaagagcagaaattagcaagcgggagggaaggccatttcaggaggtggaagtagcag 504

                             
Query: 305 gctcaaggtcactgtgac 322
           ||||||||||||||||||
Sbjct: 505 gctcaaggtcactgtgac 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)