BAC Information

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BAC

Clone NameMSMg01-068B24
Chromosome2 (Build37)
Map Location 43,272,975 - 43,273,272
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC100041228
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068B24.T7 (MSMg01no068_b24.b1)MSMg01-068B24.TJ (MSMg01no068_b24.g1)
ACCAG292693AG292694
length736734
length of high quality
(start - end)
281 (41 - 321)309 (65 - 373)
definitionCHROMAT_FILE: MSMg01no068_b24.b1 PHD_FILE: MSMg01no068_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:27 2005CHROMAT_FILE: MSMg01no068_b24.g1 PHD_FILE: MSMg01no068_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGATCCGCGGAATT
CTTTGTTTATTTCTGTCACCGTTTTTTAATAGGGTTATTTGGTTTTCTGG
AGTCCAACTTCTTGAGTTCTTTACCATATATATATTGGATATTAGCCCCC
TATTGGATTTAGAATTGATAAAGACCTTTTCCCAATCTGTTGGTTGTCAT
TTTGTCTTATTGACAGTGTCCTTGGCCTACAGAATCTTTGCAATTTTATG
AGGTGCCCTTTGTCAATTCTTTATCTTACAGCACAAGCTATTGTCGTTCT
AAAACACAAAATTTATTAACAAATAAATAATTCTTGAGACAACCGGCCAC
CTTCCTGGTGATTGTTTTTTTTTCCCCCCCACGCCCCACATTTGTGCCTC
AGGTCCCGGCAGGAGCCTCCTTGGCTCCAGAATTAAAAAAACAGGGAATG
CTGGTTGGGTGACAGTTGTGGAATTCAGAGGTCAGCCATTTCTGGCACAG
GCGAAAGTCACAGACCTTCTGAGCTGTCGTCTTCTTAGGATCCTGATAAC
CTGTTCCCCTCTCTGGTTCAAATTTCACAGTTTCCTGTGAAAGATCCTGT
TTTGGGTGCCTCATCCTCTCCTTGGATGATGTTCTAATACTTTATAACTG
TTCTTCTTCCTGAATCAGTACACTTTGCTCGCTAAGACTTGTTTTGACTC
TTTATATTTTTACTTAATATTTAGTCCTCCACGTCA
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCCAATCATTTATATTCAAAGCTTGAGATCACAAG
ATTATGTATATCAAGACAGCTGTGCAGCTTTTAAAATAATTCTATCCTTT
TTGAATTAACACTATTTTTTCCCCTCTCCATGTGGATTCACTTTGAATAT
AAAGTATTTGCCTAATCAAAACCTAGGCAAGAAACTGAGCACTTGAAGTG
CATAATGTATTTCCTTGTCCAATGGACAATGGTGGCCAAAGAGAGATTGA
GAATTTGGAAATAAATCTTACTTCATAGTGTTTTCCTTTTCATGAAAACT
GCTAGTGGGGAGAGATGTGTTTATACGGCCAGCACACCAGCTGTTAGACA
TTAAATATAGGACAAAAAAGGCTGGGGACCGATCCCACCGAGCAGCATCC
ATGAGCTTTCTAGCCAGTGAACAATAAACAGCAAATTATGACTAGCACAG
ATGGTTCTTTTACTTGGGAAAAAGGAAATAAATTGGAAGTGAAACCCTTC
TATAAGACTTTGTGTAGTCTGCTAAATGTTTTCCCTGGCTCAAAGTAATG
AGGGGAACATGAGGACACCTGGACACATGCTAAATACTGCTCTTAATTTG
TTGGTTTCTTTGGAAACAGACCTTCACATCATAGCTCAAGCTAGCCTGTA
ACTCAAAAGCAGCCCAGATTAGCCTCTGTTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_b24.g1 MSMg01no068_b24.g1 CHROMAT_FILE:
MSMg01no068_b24.g1 PHD_FILE: MSMg01no068_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:27 2005
         (309 letters)



>mm_chr2_43272917_43273624
          Length = 708

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tcatttatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagctt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 356 tcatttatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagttt 297

                                                                       
Query: 67  ttaaaataattctatcctttttgaattaacactattttttcccctctccatgtggattca 126
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 296 ttaaaataattctatcctttttgaattaacacta-tttttcccctctccatgtggattca 238

                                                                       
Query: 127 ctttgaatataaagtatttgcctaatcaaaacctaggcaagaaactgagcacttgaagtg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctttgaatataaagtatttgcctaatcaaaacctaggcaagaaactgagcacttgaagtg 178

                                                                       
Query: 187 cataatgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cataatgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaa 118

                                                                      
Query: 247 ataaatcttacttcatagtgttttccttttcatgaaaactgctagtggggagagatgtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 117 ataaatcttacttcatagtgttttccttttcatgaaaactgctagtggggagacatgtg 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)